Table 3.
Distribution of SNPs, type of mutation in immune and antioxidant genes in healthy and endometritis affected buffaloes.
| Gene | SNPs | Healthy | Mastitis | Total | Type of mutation | Amino acid number and type |
|---|---|---|---|---|---|---|
| A2M | C90T | 0/25 | 14/25 | 14/50 | Synonymous | 30 V |
| A242G | 0/25 | 20/25 | 20/50 | Non-synonymous | 81 H to R | |
| TLR2 | G93A | 8/25 | 0/25 | 8/50 | Synonymous | 31 T |
| TGF-β | T50C | 0/25 | 21/25 | 21/50 | Non-synonymous | 17 I to T |
| T372G | 0/25 | 17/25 | 17/50 | Non-synonymous | 124 D to E | |
| IRAK3 | C73T | 13/25 | 0/25 | 13/50 | Non-synonymous | 25 P to S |
| CCL2 | G177A | 0/25 | 9/25 | 9/50 | Non-synonymous | 59 M to I |
| C222T | 17/25 | 0/25 | 17/50 | Synonymous | 74 P | |
| FCAMR | G178C | 0/25 | 13/25 | 13/50 | Non-synonymous | 60 D to H |
| iNOS | T203C | 0/25 | 14/25 | 14/50 | Non-synonymous | 68 L to P |
| ADAMTS20 | A319C | 19/25 | 0/25 | 19/50 | Non-synonymous | 107 L to I |
| KCNT2 | T50C | 0/25 | 23/25 | 23/50 | Non-synonymous | 17 S to F |
| A226T | 0/25 | 11/25 | 11/50 | Non-synonymous | 76 T to S | |
| MAP3K4 | G46A | 14/25 | 0/25 | 14/50 | Non-synonymous | 16 V to I |
| T159C | 16/25 | 0/25 | 16/50 | Synonymous | 53 T | |
| RXFP1 | T219C | 18/25 | 0/25 | 18/50 | Synonymous | 73 N |
| FKBP5 | A227G | 20/25 | 0/25 | 20/50 | Non-synonymous | 76 N to S |
| EPHA4 | A31G | 9/25 | 0/25 | 9/50 | Non-synonymous | 11 T to A |
| T129G | 12/25 | 0/25 | 12/50 | Non-synonymous | 43 S to R | |
| SOD3 | T117G | 0/25 | 11/25 | 11/50 | Synonymous | 59 G |
| CAT | T175A | 22/25 | 0/25 | 22/50 | Non-synonymous | 59 L to M |
| A340G | 0/25 | 18/25 | 18/50 | Non-synonymous | 114 M to V | |
| GPX | G90T | 0/25 | 13/25 | 13/50 | Synonymous | 30 A |
| NDUFS5 | C179T | 0/25 | 14/25 | 14/50 | Non-synonymous | 60 A to V |
A2M alpha-2-macroglobulin, TLR2 Toll-like receptor 2, TGF-β Transforming growth factor beta, IRAK3 Interleukin 1 receptor associated kinase 3, CCL2 C–C Motif Chemokine Ligand 2, FCAMR Fc alpha and Mu receptor, iNOS Inducible nitric oxide synthase, ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20, KCNT2 Potassium sodium-activated channel subfamily T member 2, MAP3K4 Mitogen-activated protein kinase kinase kinase 4, MAPK14 Mitogen-activated protein kinase 14, FKBP5 FKBP prolyl isomerase 5, RXFP1 Relaxin family peptide receptor 1, EPHA4 Ephrin type-A receptor 4, SOD3 Superoxide dismutase 3, CAT Catalase, GPX Glutathione peroxidase, and NDUFS5 NADH:ubiquinone oxidoreductase subunit s5. A Alanine, D Aspartic acid, E Glutamic acid, F Phenylalanine, G Glycine, H Histidine, I Isoleucine, L Leucine, M Methionine, N Asparagine, P Proline, R Argnine, S Serine, T Threonine, V Valine.