Table 3.
Summary of the MQTLs detected for salinity tolerance in rice.
| MQTL name | Chr | Position (cM) | Start marker | End marker | CI (95%) | Genetic left | Genetic right | Genomic left | Genomic right | No of candidate QTLs | Candidate QTLs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MQTL1.1 | 1 | 51.58 | Bin1_11.19–11.26 | Bin1_11.98–12.32 | 0.73 | 51.45 | 51.68 | 11.23 | 12.15 | 28 | SDW, SNA, SES, SL, RL, RNA, SFW, PH, RDW, SNAK, RK |
| MQTL1.2 | 1 | 102.58 | Bin1_21.99–22.18 | Bin1_23.5–23.74 | 0.1 | 102.40 | 102.69 | 22.09 | 23.62 | 75 | SES, SH, SNAK, SK, CHL, SFD, SL, RDW, SDW, FNAK, RNA, PH, SFW, SNA, PF, RNAK |
| MQTL1.3 | 1 | 53.71 | Dj01_13425188F | Sj01_13981650R | 1.03 | 53.67 | 53.81 | 13.43 | 13.98 | 10 | SES, RNA, SNA, SNAK |
| MQTL1.4 | 1 | 86.04 | Sj01_21160869F | Sj01_22728151R | 3.01 | 86.00 | 86.19 | 21.16 | 22.73 | 5 | SES, SK |
| MQTL1.5 | 1 | 116.02 | Dj01_29556725R | Dj01_29707926R | 0.14 | 115.98 | 116.08 | 29.56 | 29.71 | 31 | FNAK, SH, SNAK, SES, SK, RNA, SNA, RK, RNAK |
| MQTL1.6 | 1 | 53.04 | Dj01_13193179F | Bin1_11.98–12.32 | 1.35 | 52.98 | 53.10 | 13.19 | 14.23 | 11 | PH, RL, SFW, SDW, SES, SL |
| MQTL1.7 | 1 | 93.73 | Dj01_23852434R | Dj01_23986664R | 0.23 | 93.66 | 93.76 | 23.85 | 23.99 | 39 | SFW, SDW, SES, SL, PH, RDW, PF, SH, CHL, RL |
| MQTL2.1 | 2 | 29.86 | Dj02_07536262F | Dj02_07781792F | 0.47 | 29.85 | 29.90 | 7.54 | 7.78 | 17 | SES, PF, SK, SL, RDW, SNA, SDW, SFW |
| MQTL2.2 | 2 | 57.72 | Dj02_14366103F | Bin2_10.14–10.79 | 0.49 | 57.47 | 58.20 | 14.37 | 15.01 | 18 | SES, SK, SNA, RFW, SDW, RL |
| MQTL2.3 | 2 | 83.78 | Sj02_21161357R | Dj02_21613227F | 0.81 | 83.72 | 83.82 | 21.16 | 21.61 | 7 | SL, SES, RDW, SNA, SK, SNAK, RFW |
| MQTL2.4 | 2 | 26.49 | Dj02_06374313R | Dj02_07234989F | 1.68 | 26.47 | 26.53 | 6.37 | 7.23 | 8 | SES, SK, SNA |
| MQTL2.5 | 2 | 52.32 | Sj02_13307122F | Dj02_13470371F | 0.3 | 52.20 | 52.38 | 13.31 | 13.47 | 8 | SFW, SES, SK |
| MQTL2.6 | 2 | 62.28 | Sj02_15807823F | Sj02_16056120R | 0.43 | 62.20 | 62.39 | 15.81 | 16.06 | 14 | SNA, SNAK, SK, SES, RNAK |
| MQTL2.7 | 2 | 29.84 | Sj02_07525457R | Dj02_07781792F | 0.47 | 29.66 | 29.85 | 7.53 | 7.78 | 12 | SL, SDW, PF, SES, SDS, RDW |
| MQTL2.8 | 2 | 83.51 | Sj02_21146226F | Dj02_21461962R | 0.03 | 83.42 | 83.71 | 21.15 | 21.46 | 14 | RDW, PL, SES, IR, SL, SDW, GYLD, RL |
| MQTL3.1 | 3 | 30.91 | Sj03_07607092R | Dj03_08259469F | 1.22 | 30.91 | 30.93 | 7.61 | 8.26 | 7 | RL, SFW, SES, RDW, BM, SK |
| MQTL3.2 | 3 | 57.79 | Dj03_13985031R | Sj03_15864306F | 4.25 | 57.78 | 57.81 | 13.99 | 15.86 | 9 | RDW, SK, SNAK, SFW, SDW, SNA |
| MQTL3.3 | 3 | 86.05 | Dj03_21966002R | Dj03_22049522R | 0.1 | 86.03 | 86.10 | 21.97 | 22.05 | 16 | SES, SDS, SK, SFW, SNA, SNAK, CHL, SL, SDW |
| MQTL3.4 | 3 | 50.68 | Sj03_11108193R | Dj03_14901674R | 7.43 | 50.67 | 50.69 | 11.11 | 14.90 | 6 | RK, SES, SK, SNAK, SNA |
| MQTL3.5 | 3 | 20.16 | Sj03_05343807R | Sj03_05349416F | 0.49 | 20.16 | 20.17 | 5.34 | 5.35 | 5 | RL, RDW, SFW, BM |
| MQTL3.6 | 3 | 58.53 | Sj03_13841038R | Sj03_16147935F | 4.55 | 58.41 | 58.53 | 13.84 | 16.15 | 5 | RDW, SFW, SDW |
| MQTL3.7 | 3 | 86.29 | Dj03_22049522R | Dj03_22107671R | 0.08 | 86.28 | 86.39 | 22.05 | 22.11 | 14 | PH, RL, SL, SFW, SES, SDS, SDW, CHL |
| MQTL4.1 | 4 | 19.47 | Dj04_04170196F | Dj04_05950987R | 3.54 | 19.44 | 19.50 | 4.17 | 5.95 | 5 | SFW, GYLD, DM |
| MQTL4.2 | 4 | 52.5 | Dj04_13251149F | Dj04_13674458R | 0.72 | 52.44 | 52.60 | 13.25 | 13.67 | 5 | SK, SNA, SNAK, RDW, SES |
| MQTL4.3 | 4 | 61.26 | Bin4_13.97–14.12 | Dj04_16001101R | 1.17 | 60.94 | 61.23 | 14.05 | 16.00 | 8 | SES, SNAK, SDW, SFW |
| MQTL4.4 | 4 | 80.26 | Sj04_20496453R | Sj04_20593680F | 0.16 | 80.20 | 80.28 | 20.50 | 20.59 | 13 | RNA, RK, RNAK, SNAK, SDW, SL, SK, GP, IR, SFW |
| MQTL4.5 | 4 | 19.44 | Dj04_04170196F | Dj04_05928778R | 3.55 | 19.43 | 19.44 | 4.17 | 5.93 | 5 | DM, SFW, NFS, GYLD |
| MQTL4.6 | 4 | 29.14 | Dj04_07389255R | Dj04_07593548R | 0.29 | 28.69 | 29.27 | 7.39 | 7.59 | 5 | GP, SH, RL |
| MQTL4.7 | 4 | 59.66 | Dj04_14237029R | Bin4_14.55–14.97 | 4.12 | 58.50 | 58.66 | 14.24 | 14.76 | 5 | SES, SDW, SFW |
| MQTL4.8 | 4 | 80.58 | Sj04_20593680F | Dj04_20683782F | 0.1 | 80.50 | 80.59 | 20.59 | 20.68 | 5 | SL, IR, SDW, SFW, GP |
| MQTL5.1 | 5 | 40.08 | Sj05_09216782R | Sj05_11207151R | 3.97 | 39.66 | 40.50 | 9.22 | 11.21 | 7 | CHL, RL, SL, SNAK, RNAK, SNA |
| MQTL5.2 | 5 | 55.1 | Dj05_13712994R | Sj05_14450116F | 1.47 | 54.82 | 55.33 | 13.71 | 14.45 | 5 | SDW, RDW, SES, SFW |
| MQTL5.3 | 5 | 82.82 | Sj05_21045832R | Dj05_21302103F | 0.4 | 82.75 | 82.92 | 21.05 | 21.30 | 15 | SNAK, SFW, SES, SL, SNA, PH, BM, RDW, SK |
| MQTL5.4 | 5 | 54.56 | Sj05_13572519F | Sj05_14344276R | 1.44 | 54.46 | 54.59 | 13.57 | 14.34 | 8 | RL, RDW, SFW, SES, SDW |
| MQTL5.5 | 5 | 81.68 | S5_20820664 | Dj05_20956305F | 0.44 | 82.63 | 82.72 | 20.82 | 20.96 | 12 | SL, SES, SFW, PF, BM, PH, RDW |
| MQTL6.1 | 6 | 38.97 | Sj06_09382846R | Dj06_10547551F | 2.24 | 38.86 | 39.03 | 9.38 | 10.55 | 5 | SDW, SES, SL |
| MQTL6.2 | 6 | 70.25 | Dj06_17122068R | Bin6_12.44–13.03 | 3.17 | 70.23 | 70.27 | 17.12 | 12.74 | 6 | SNA, RNA, SES, RL |
| MQTL6.3 | 6 | 93.62 | Sj06_23592921R | Sj06_24128786R | 1.19 | 93.60 | 93.62 | 23.59 | 24.13 | 10 | GYLD, SNAK, RK, RNA, SFW, RL |
| MQTL6.4 | 6 | 69.57 | Dj06_16822772F | Dj06_18803272F | 3.69 | 69.54 | 69.59 | 16.82 | 18.80 | 5 | SNA, RNA, SES |
| MQTL6.5 | 6 | 39.84 | Dj06_09635471F | Sj06_10727303F | 2.13 | 39.60 | 39.85 | 9.64 | 10.73 | 8 | SDW, SES, SL, SFW |
| MQTL6.6 | 6 | 63.1 | Bin6_11.04–11.16 | Sj06_16652720F | 1.81 | 63.08 | 63.24 | 11.10 | 16.65 | 10 | SDS, CHL, SES, IR, RL, SDW |
| MQTL6.7 | 6 | 96.2 | Sj06_24039978F | Sj06_25103415R | 2.05 | 96.09 | 96.20 | 24.04 | 25.10 | 9 | GYLD, SFW, RL, RK, BM |
| MQTL7.1 | 7 | 61.24 | Dj07_14488453R | Sj07_16873873F | 4.83 | 61.14 | 61.37 | 14.49 | 16.87 | 9 | SES, RDW, RNA, RL |
| MQTL7.2 | 7 | 9.47 | Sj07_01801193R | Sj07_03154026R | 2.49 | 9.42 | 9.55 | 1.80 | 3.15 | 6 | RDW, SDW, SFW |
| MQTL7.3 | 7 | 56.92 | Dj07_14488453R | Dj07_14672955R | 0.38 | 56.89 | 56.96 | 14.49 | 14.67 | 5 | SDS, SES, CHL |
| MQTL8.1 | 8 | 84.94 | Sj08_21582839F | Dj08_21828309F | 0.3 | 84.83 | 85.12 | 21.58 | 21.83 | 6 | GYLD, RK, RNAK, RFW |
| MQTL8.2 | 8 | 80.14 | Dj08_18717359R | Dj08_22198956R | 6.79 | 80.01 | 80.17 | 18.72 | 22.20 | 8 | SK, SNAK, SNA, SES, RK, RNAK |
| MQTL8.3 | 8 | 23.1 | Sj08_05750246F | Sj08_06044001R | 0.52 | 23.03 | 23.14 | 5.75 | 6.04 | 5 | CHL, BM, RDW, SDW |
| MQTL8.4 | 8 | 84.94 | Sj08_21582839F | Dj08_21747733F | 0.31 | 84.83 | 85.12 | 21.58 | 21.75 | 6 | SFW, GYLD, SL, RFW |
| MQTL9.1 | 9 | 24.86 | Dj09_06118286F | Dj09_06831346F | 1.39 | 24.80 | 24.92 | 6.12 | 6.83 | 9 | SFW, SNA, SES, RDW, RFW, RNA, RNAK, SDW |
| MQTL9.2 | 9 | 41.54 | Dj09_10618925R | Dj09_10752402R | 0.09 | 41.54 | 41.60 | 10.62 | 10.75 | 7 | CHL, RL, SES |
| MQTL9.3 | 9 | 62.92 | Dj09_16057823R | Bin9_14.39–14.71 | 0.49 | 62.68 | 62.92 | 16.06 | 14.55 | 14 | SES, SDS, CHL, RL, RK, RNA, RNAK, SNAK, SDW, RFW |
| MQTL9.4 | 9 | 61.8 | Bin9_12.72–13.11 | Sj09_17214079R | 5.2 | 61.76 | 61.91 | 12.92 | 17.21 | 6 | RNAK, SNAK, RK, SES, RNA |
| MQTL10.1 | 10 | 85.23 | Dj10_21071821F | Sj10_22586330F | 2.95 | 85.19 | 85.25 | 21.07 | 22.59 | 16 | BM, CHL, SK, PF, SES, RL |
| MQTL10.2 | 10 | 126.18 | RM8207 | RM3152 | 0.73 | 126.16 | 126.41 | 9.80 | 10.21 | 6 | CHL, SL, GP, IR, RL |
| MQTL10.3 | 10 | 84.49 | Dj10_20992328F | Sj10_22266999F | 2.52 | 84.40 | 84.59 | 20.99 | 22.27 | 13 | PF, BM, CHL, RL, SES |
| MQTL10.4 | 10 | 126.17 | RM8207 | RM311 | 0.54 | 126.16 | 126.41 | 9.80 | 10.23 | 6 | CHL, SL, GP, IR, RL |
| MQTL11.1 | 11 | 67.46 | Dj11_17355923R | Dj11_17412175F | 0.11 | 67.43 | 67.53 | 17.36 | 17.41 | 7 | SNA, SL, SFW, SES |
| MQTL11.2 | 11 | 8.5 | Dj11_02304244R | Sj11_02345272F | 0.07 | 8.43 | 8.54 | 2.30 | 2.35 | 7 | CHL, SES, SDW |
| MQTL11.3 | 11 | 39.01 | Sj11_09688800F | Dj11_10527020F | 1.65 | 38.99 | 39.18 | 9.69 | 10.53 | 5 | SDW, RL, RDW, SES |
| MQTL11.4 | 11 | 67.47 | Dj11_17340485F | Sj11_17434166R | 0.11 | 67.43 | 67.53 | 17.34 | 17.43 | 6 | SL, RFW, SFW, SIS, SES |
| MQTL12.1 | 12 | 65.97 | Dj12_16350381F | S12_17681133 | 2.26 | 65.90 | 66.02 | 16.35 | 17.68 | 5 | SFW, SDW, SL, IR |
| MQTL12.2 | 12 | 72.57 | Bin12_17.05–17.16 | S12_18855850 | 0.04 | 72.40 | 72.70 | 17.11 | 18.86 | 13 | SH, SFW, SNA, SES, SDW, SNAK, RDW, SL, RFW |
| MQTL12.3 | 12 | 46.7 | Bin12_9.31–9.4 | Sj12_13864120F | 7.15 | 46.23 | 46.78 | 10.39 | 13.86 | 6 | SNAK, SES, SK |
| MQTL12.4 | 12 | 72.43 | Bin12_17.05–17.16 | Dj12_18705808F | 0.04 | 72.40 | 72.70 | 17.11 | 18.71 | 10 | SES, SFW, SL, SH, SDW, RDW |