Table 1.
GWAS catalog reported genes identified by OWS, LD-PRS, and BWS in DNA methylation data.
| OWS | LD-PRS | BWS | nPC | ||||
|---|---|---|---|---|---|---|---|
| Gene | SP | Gene | SP | Gene | SP | Gene | SP |
| HLA-DRB1 | 1.000 | HLA-DRB1 | 1.000 | HLA-DRB1 | 1.000 | CCR6 | 1.000 |
| HLA-DRB5 | 1.000 | KIF26B | 1.000 | PRKCH | 0.998 | ZFP36L1 | 1.000 |
| CCR6 | 0.992 | HLA-DRB5 | 0.974 | HLA-DQA1 | 0.992 | TCF7 | 0.992 |
| ZFP36L1 | 0.988 | TNXB | 0.974 | HLA-DOB | 0.894 | TNFSF1A | 0.988 |
| NFATC1 | 0.986 | PRDM16 | 0.970 | HLA-DQB1 | 0.858 | TLR4 | 0.986 |
| TNFRSF1A | 0.950 | HLA-DQA1 | 0.950 | FNBP1 | 0.844 | IL2RB | 0.980 |
| SPSB1 | 0.928 | HLA-DQB1 | 0.950 | TCF7 | 0.842 | HLA-DRB1 | 0.966 |
| ETS1 | 0.898 | HLA-DMA | 0.912 | CD247 | 0.804 | CD247 | 0.962 |
| HLA-DQA1 | 0.888 | NOTCH4 | 0.854 | HLA-DQB1 | 0.936 | ||
| HLA-DQB1 | 0.880 | HLA-DRA | 0.806 | HLA-DRB5 | 0.894 | ||
| TCF7 | 0.794 | RIM26 | 0.784 | ZNF175 | 0.866 | ||
| CCR6 | 0.776 | ||||||
Notes: boldface means that the genes are identified by four methods.