Table 2.
GWAS catalog reported genes identified by OWS, LD-PRS, BWS, and nPC in DNA sequence data.
| OWS | LD-PRS | BWS | nPC | ||||
|---|---|---|---|---|---|---|---|
| Gene | SP | Gene | SP | Gene | SP | Gene | SP |
| HLA-DRB1 | 1.000 | HLA-DRB1 | 1.000 | HLA-DRA | 1.000 | HLA-DRB5 | 1.000 |
| HLA-DQA1 | 1.000 | HLA-DQA1 | 1.000 | HLA-DQA1 | 1.000 | HLA-DQA1 | 0.998 |
| PRDM16 | 1.000 | HLA-DQB1 | 1.000 | TNXB | 0.996 | IRF5 | 0.966 |
| PRKCB | 1.000 | HLA-DRA | 1.000 | HLA-DMA | 0.946 | SOCS2 | 0.944 |
| PCSK5 | 1.000 | PRDM16 | 1.000 | SUOX | 0.932 | HLA-DRB1 | 0.942 |
| NOTCH4 | 1.000 | PRKCB | 1.000 | WNT16 | 0.930 | TYK2 | 0.928 |
| GPC5 | 1.000 | PCSK5 | 1.000 | TYK2 | 0.928 | PRDM1 | 0.890 |
| RBFOX1 | 1.000 | NOTCH4 | 1.000 | RPS6KB1 | 0.902 | NOTCH4 | 0.884 |
| DOCK1 | 1.000 | GPC5 | 1.000 | CTNNA3 | 0.898 | IL7R | 0.872 |
| KIF26B | 1.000 | RBFOX1 | 1.000 | HLA-DRB5 | 0.892 | ATXN2 | 0.872 |
| CTNNA3 | 1.000 | DOCK1 | 1.000 | HIPK1 | 0.890 | B3GNT2 | 0.870 |
| GALNT18 | 1.000 | ZMIZ1 | 1.000 | SLC9A8 | 0.882 | UBE2L3 | 0.870 |
| PCDH15 | 1.000 | SLC9A9 | 1.000 | SKIV2L | 0.860 | ELMO1 | 0.864 |
| PTPRM | 1.000 | RARB | 1.000 | TNIP1 | 0.860 | GATA3 | 0.846 |
| HLA-DRB5 | 0.998 | KIF26B | 1.000 | PDF2A | 0.836 | RMI2 | 0.844 |
| RARB | 0.998 | CTNNA3 | 1.000 | TNFAIP3 | 0.834 | RORC | 0.836 |
| HLA-DRA | 0.996 | GALNT18 | 1.000 | RARB | 0.824 | HLA-DRA | 0.836 |
| ZMIZ1 | 0.996 | PCDH15 | 1.000 | RBXW8 | 0.828 | ||
| SLC9A9 | 0.994 | PTPRM | 1.000 | ||||
| STAT4 | 0.994 | PDE3A | 0.998 | ||||
| PDE3A | 0.990 | GFRA1 | 0.996 | ||||
| IKZF1 | 0.986 | GABBR2 | 0.994 | ||||
| EDIL3 | 0.992 | ||||||
Notes: boldface means that the genes are identified by four methods.