Table 1.
CaImAn parameters used to extract calcium signals
| mouse | min_corr | sem | min_pnr | sem | |
|---|---|---|---|---|---|
| cohort 1 | #44 | 0.7 | - | 4 | - |
| #45 | 0.7 | - | 5 | - | |
| #47 | 0.7 | - | 5 | - | |
| #93 | 0.7 | - | 6 | - | |
| #94 | 0.8 | - | 4 | - | |
| #95 | 0.8 | - | 6 | - | |
| #216 | 0.8 | - | 4.5 | - | |
| #218 | 0.8 | - | 6 | - | |
| #219 | 0.8 | - | 3.5 | - | |
| cohort 2 | #478 | 0.787 | 0.001 | 12.718 | 0.099 |
| #480 | 0.780 | 0.004 | 10.760 | 0.197 | |
| #481 | 0.798 | 0.003 | 12.290 | 0.081 | |
| #483 | 0.783 | 0.001 | 12.097 | 0.129 | |
| #485 | 0.813 | 0.001 | 14.525 | 0.101 |
Min_corr and min_pnr describe minimal thresholds for the initialization of component identification, namely the minimal correlation value and minimal PNR.