Skip to main content
. 2024 Mar 9;15:2168. doi: 10.1038/s41467-024-46485-4

Fig. 8. Alphapept user interface, workflow management, deploying, and integrating.

Fig. 8

a The AlphaPept GUI is based on a server architecture that can be installed on a workstation and used locally. Additionally, it can be installed on a server and accessed remotely from multiple workstations in the network. b AlphePept processing pipeline. The AlphaPept GUI creates three folders for its processing system. New experiments are defined within the interface and saved as YAML files in the Queue folder with automatically triggered processing. c Example plots from the History and Results Tab in AlphaPept: Overview of the number of features, peptides, and protein groups per injected sample (left panel). Graphing retention time tailing as a function of acquisition date, as an illustration of using AlphaPept for quality assurance.