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. 2024 Jan 17;11(3):uhae022. doi: 10.1093/hr/uhae022

Figure 2.

Figure 2

Phylogenetic analysis and identification of WGD events. a The phylogenetic tree constructed based on 178 single-copy genes.b The numbers of expanded or contracted gene families among 14 species. c WGD signatures in Labiatae (Rate-adjusted mixed Ks distribution for M. suaveolens). Gray: the anchor pair Ks distribution of this M. suaveolens, the vertical dashed lines labeled ‘a’ indicated WGD age estimates based on Ks. d Phylogram of M. suaveolens, Mentha longifolia, Schizonepeta tenuifolia, Thymus quinquecostatus, and Vitis vinifera by Ks rates, with branch lengths. Abbreviations: Acar, Artemisia carvifolia; Atha, Arabidopsis thaliana; Cros, Catharanthus roseus; Ks, synonymous substitutions per synonymous site; Lesc, Lycopersicon esculentum; Mlon, M. longifolia; M. suaveolens, Mentha suaveolens; Osat, Oryza sativa; Sbai, Scutellaria baicalensis; Sind, Sesamum indicum; Smil, Salvia miltiorrhiza; Sspl, Salvia splendens; Sten, Schizonepeta tenuifolia; Tqui, Thymus quinquecostatus; Vvin, V. vinifera; WGD, whole genome duplication.