Table 2.

Allelic profiles, wsp and HVR allele number identifiers for Wolbachia strains in Nylanderia ants.

Host species (clade)	Sample code	Strain Name (MLST)	gatB	coxA	hcpA	ftsZ	fbpA	wsp	HVR1	HVR2	HVR3	HVR4
Nylanderia fulva (clade I)	N004	wNyla2	–	15	i	6	1	408	9	9	12	271
	N030	wNyla4	–	15	i	i	1	408	9	9	12	271
	N035	wNyla6	–	20	45	ii	–	351	21	21	25	317
	N047	wNyla7	–	15	i	iii	1	408	9	9	12	271
	N049	wNyla7	–	15	i	iii	1	408	9	9	12	271
	N060	wNyla6	43	20	45	ii	–	351	21	21	25	317
	N077	wNyla7	–	15	i	iii	1	408	9	9	12	271
	N084	wNyla8 wNyla9	– –	15 20	iii iii	ii ii	1 1	351 351	21 21	21 21	25 25	317 317
	N093	wNyla10	–	15	i	iv	1	ii	9	9	12	130
	N106	wNyla7	–	15	i	iii	1	408	9	9	12	271
	N118	wNyla12	–	ii	i	iii	1	408	9	9	12	271
	N122	wNyla7	–	15	i	iii	1	408	9	9	12	271
	N159	wNyla13	–	20	45	vi	–	351	21	21	25	317
N. fulva (clade II)	N001	wNyla1	–	20	44	37	i	58	37	38	41	317
	N007	wNyla1	–	20	44	37	i	58	37	38	41	317
	N018	wNyla1	–	20	44	37	i	58	37	38	41	317
	N034	wNyla1	–	20	44	37	i	58	37	38	41	317
	N058	wNyla1	–	20	44	37	i	58	37	38	41	317
	N105	wNyla11	–	20	45	v	–	351	21	21	25	317
	N132	wNyla1	–	20	44	37	i	58	37	38	41	317
N. fulva (clade III)	N022	wNyla3	–	20	ii	17	20	50	42	43	9	272
	N031	wNyla5	43	i	45	ii	–	i	21	21	25	317
Nylanderia sp. 1	N064	wNyla14	–	iii	iv	vii	ii	iii	9	9	12	272
	N124	wNyla14	–	iii	iv	viii	ii	iii	9	9	12	272
Paratrechina longicornis	PL150	ST471	168	147	262	132	226	708	242	274	276	308

Roman numbers indicate unique alleles not found in Wolbachia MLST database. Strain names are given for each unique combination of MLST loci, and the sequence type (ST) for the sample PL150. Sample N084 was co-infected with two similar Wolbachia strains (wNyla8 and wNyla9).