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. 2024 Mar 11;12:RP91218. doi: 10.7554/eLife.91218

Table 2. Generation of the resting state model using a combination of multiple templates for different voltage-sensing domains (VSDs) and pore domains (PDs) of Naᵥ1.7.

Template pdb Domains used Res IDs (from template) Res IDs (human Naᵥ1.7 numbering) Template info
7xve VSDI, PDI, PDII 1–404, 541–650 8–411, 864–972 Naᵥ1.7 mutant (L866F, T870M, and A874F on S5II; V947F, M952F, and V953F on S6II; and V1438I, V1439F, and G1454C on S6III, E156K on S2I and G779R on S2II) VSDI deactivated (VSDII partially deactivated but not used)
7k48 VSDII, PDII, VSDIII, PDIII, PDIV 405, 938, 1115–1244 728–973, 1175–1462, 1639–1768 Naᵥ1.7/NaᵥAb chimera, where top half of each VSD is Naᵥ1.7 VSDII; all VSDs deactivated with engineered tarantula toxin m3-Huwentoxin-IV bound
6nt4 VSDIV, PDIV, PDI 939–1244, 239–404 1463–1768, 246–411 Naᵥ1.7/NaᵥPas chimera, full Naᵥ1.7 VSDI, and VSDIV deactivated with α-scorpion neurotoxin AaH2 bound
7w9k Loops between S5 and S6 regions for PDII, PDIII, and PDIV 563–619, 811–918, 1141–1213 886–942, 1335–1442, 1665–1737 Fast-inactivated Naᵥ1.7 (all VSDs activated) DIII–IV linker bound to pore