Table 3.
Sites under pervasive and episodic diversifying (positive) selection pressure in the meq gene estimated by datamonkey and PAML methods.
| Codon position | Datamonkey |
PAML |
||||
|---|---|---|---|---|---|---|
| FUBARA
Probability α < β |
SLACB
P-[dN/dS > 1] |
FELB
p-value |
MEMEB
p-value |
CodemlC
Pr(ω > 1) |
||
| M2a | M8a | |||||
| 2 | 0.945 | – | – | – | – | – |
| 3 | -D | – | – | 0 | – | – |
| 77 | 0.965 | – | – | – | 0.975 | 0.987 |
| 80 | 0.903 | – | – | – | 0.974 | 0.986 |
| 88 | 0.991 | – | – | 0.03 | – | – |
| 93 | 0.907 | – | – | – | – | – |
| 101 | 0.925 | – | – | – | – | – |
| 115 | 0.955 | – | 0.0006 | – | 0.998 | 0.999 |
| 119 | – | – | – | – | 0.974 | 0.986 |
| 139 | 0.975 | – | – | – | – | – |
| 153 | – | – | 0.0004 | – | 0.979 | 0.989 |
| 176 | 0.998 | 0.0392 | – | 0 | 0.971 | 0.985 |
| 180 | 0.973 | – | – | 0.08 | – | – |
| 194 | 0.944 | – | – | 0.1 | – | – |
| 217 | 0.998 | – | – | 0 | 0.997 | 0.999 |
| 277 | 0.903 | 0.0585 | – | – | 0.968 | 0.983 |
| 283 | – | – | – | – | 0.971 | 0.985 |
| 285 | – | – | – | 0.01 | ||
| 320 | – | – | – | – | 0.973 | 0.986 |
| 326 | – | – | 0.0002 | – | – | – |
| 329 | – | – | – | 0 | – | – |
| 339 | 0.943 | – | – | 0.09 | – | – |
A
FUBAR (p > 0.9).
B
MEME, FEL, SLAC (p < 0.1).
C
codeml p > 0.95.
D
-: no signal detected.