Table 1.
List of samples and genome sequencing results.
| Reference | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Name | Region | Village/commune | Year | Latitude | Longitude | Genetic lineage | Mean depth | Accession number | Sampling | Sequencing |
| Senegal | ||||||||||
| Senegal/Dakar/1994* | Dakar | Dakar | 1994 | 14.74 | −17.41 | I | 573 | OR286474 | Kwiatek et al. (2007) | Victoria et al. (2009) |
| Senegal/Soum/2012/2* | Fatick | Soum | 2012 | 14.09 | −16.48 | II | 4,407 | OR286488 | Bataille et al. (2021) | Victoria et al. (2009) |
| Senegal/Kedougou/2016/31 | Kedougou | Kedougou | 2016 | 12.55 | −12.20 | II | 9,520 | OR286499 | Tounkara et al. (2021) | Eloiflin et al. (2019) |
| Senegal/Pakour/2013/2 | Kolda | Pakour | 2013 | 12.76 | −13.96 | II | 6,015 | OR286483 | Bataille et al. (2021) | Victoria et al. (2009) |
| Senegal/Nguekhokh/2010/2 | Thiès | Nguekhokh | 2010 | 14.52 | −17.01 | II | 10,811 | OR286476 | Bataille et al. (2021) | Victoria et al. (2009) |
| Senegal/Ngairing/2010/1 | Ngairing | 2010 | 14.46 | −17.04 | II | 7,320 | OR286489 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Senegal/Ngairing/2010/9 | II | 6,915 | OR286477 | Bataille et al. (2021) | Victoria et al. (2009) | |||||
| Senegal/SakhMecke/2012/3 | Sâkh Mécké | 2012 | 14.94 | −16.49 | II | 9,754 | OR286485 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Senegal/GayeMecke/2013/1 | Gaye Mécké | 2013 | 15.10 | −16.49 | II | 11,204 | OR286487 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Senegal/MbourJoal/2013/2 | Mbour Joal | 2013 | 14.18 | −16.84 | II | 8,653 | OR286486 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Guinea | ||||||||||
| Guinea/Dalaba/2013 | Dalaba | 2013 | 10.69 | −12.25 | II | 6,205 | OR286479 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Mali | ||||||||||
| Mali/Bamako/1999* | Bamako | Bamako | 1999 | 12.64 | −8.00 | II | 10,785 | OR286500 | Kwiatek et al. (2007) | Eloiflin et al. (2019) |
| Mali/Kayes/2016/39 | Kayes | Kayes | 2016 | 12.67 | −11.16 | II | 7,913 | OR286503 | Tounkara et al. (2021) | Eloiflin et al. (2019) |
| Mali/Kolondieba/2013/1 | Sikasso | Kolondieba | 2013 | 11.08 | −6.90 | II | 6,612 | OR286496 | Bataille et al. (2021) | Eloiflin et al. (2019) |
| Mali/Kolondieba/2013/4 | II | 12,297 | OR286480 | Bataille et al. (2021) | Victoria et al. (2009) | |||||
| Mali/Kolondieba/2013/5 | II | 7,981 | OR286497 | Bataille et al. (2021) | Eloiflin et al. (2019) | |||||
| Mali/Kolondieba/2013/6 | II | 9,942 | OR286481 | Bataille et al. (2021) | Victoria et al. (2009) | |||||
| Mali/Kolondieba/2013/18 | II | 15,289 | OR286482 | Bataille et al. (2021) | Victoria et al. (2009) | |||||
| Mali/Tousseguela/2014/14 | Tousseguela | 2014 | 11.06 | −6.63 | II | 18,023 | OR286495 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |
| Mali/Samako/2014/9 | Samako | 2014 | 11.13 | −8.17 | II | 13,275 | OR286491 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |
| Mali/Samako/2014/10 | II | 8,430 | OR286492 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |||||
| Mali/Samako/2014/12 | II | 13,645 | OR286493 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |||||
| Mali/Samako/2014/13 | II | 12,297 | OR286494 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |||||
| Mali/Sekou/2014/3 | Sekou | 2014 | 11.18 | −8.15 | II | 10,730 | OR286490 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |
| Mali/Sagabari/2014/10 | Kayes | Sagabari | 2014 | 12.59 | −9.80 | II | 12,630 | OR286484 | Bataille et al. (2021) | Victoria et al. (2009) |
| Mauritania | ||||||||||
| Mauritania/Tarza/2012 | Tarza Tignarmaik | 2012 | 17.52 | −15.32 | II | 155 | OR286478 | Bataille et al. (2021) | Victoria et al. (2009) | |
| Burkina Faso | ||||||||||
| BurkinaFaso/Ouagadoudou/1988* | Ouagadoudou | 1988 | 12.24 | −1.56 | I | OR286475 | Kwiatek et al. (2007) | Victoria et al. (2009) | ||
| Ghana | ||||||||||
| Ghana/Accra/1976* | Accra | 1976 | 5.55 | −0.02 | II | 79 | OR286501 | Kwiatek et al. (2007) | Victoria et al. (2009) | |
| Ghana/Accra/1978* | 1978 | 5.55 | −0.02 | II | 452 | OR286502 | Kwiatek et al. (2007) | Victoria et al. (2009) | ||
| Ghana/Atta Bagbe/2014* | Atta Bagbe | 2014 | 5.10 | −1.39 | II | 12,899 | OR286498 | Tounkara et al. (2019) | Eloiflin et al. (2019) | |
| Sudan | ||||||||||
| Sudan/Sinar/1972 | Sinar | 1972 | 13.55 | 33.6 | III | 80 | OR286505 | Kwiatek et al. (2007) | Victoria et al. (2009) | |
| India | ||||||||||
| India/Kolkota/1995 | Kolkota | 1995 | 22.57 | 88.36 | IV | 829 | OR286504 | Kwiatek et al. (2007) | Victoria et al. (2009) | |
All samples sequenced are swabs, except (*), corresponding to strains isolated in cell culture from field samples; genetic lineage corresponds to the PPRV genetic lineage each sample belongs to; year is year of collection, with dates older than 2000 indicated in italics to highlight samples considered as historical; mean depth is the mean number of sequence reads per site obtained by high-throughput sequencing; accession number is the GenBank accession number for each consensus PPRV genome; reference sampling is a research article describing sampling collection and initial partial PPRV N gene sequencing; reference sequencing is a research article describing the method used for high-throughput genome sequencing.