Table 2.
Genomic coordinates and mature sequences of known/predicted EBV miRNAs.
| miRbase Accession | miRNA | Mature Sequence 1 | Coordinates (bp) 2 | Refs. |
|---|---|---|---|---|
| MI0001064 | BHRF1-1 | 4—UAACCUGAUCAGCCCCGGAGUU—25 | 41,471–41,536 | [84] |
| MI0001065 | BHRF1-2-5p BHRF1-2-3p |
6—AAAUUCUGUUGCAGCAGAUAGC—27 41—UAUCUUUUGCGGCAGAAAUUGA—62 |
42,848–42,912 | |
| MI0001066 | BHRF1-3 | 3—UAACGGGAAGUGUGUAAGCACA—24 | 42,966–43,030 | |
| MI0001067 | BART1-5p BART1-3p |
6—UCUUAGUGGAAGUGACGUGCUGUG—29 42—UAGCACCGCUAUCCACUAUGUC—63 |
139,346–139,415 | [84,85] |
| MI0001068 | BART2-5p BART2-3p |
3—UAUUUUCUGCAUUCGCCCUUGC—24 39—AAGGAGCGAUUUGGAGAAAAUAAA—62 |
152,745–152,806 | [84] |
| MI0003725 | BART3-5p BART3-3p |
12—ACCUAGUGUUAGUGUUGUGCU—32 49—CGCACCACUAGUCACCAGGUGU—70 |
139,076–139,154 | [85,86] |
| MI0003726 | BART4-5p BART4-3p |
9—GACCUGAUGCUGCUGGUGUGCU—30 47—CACAUCACGUAGGCACCAGGUGU—69 |
139,220–139,295 | |
| MI0003727 | BART5-5p BART5-3p |
15—CAAGGUGAAUAUAGCUGCCCAUCG—38 57—GUGGGCCGCUGUUCACCU—74 |
139,661–139,749 | |
| MI0003728 | BART6-5p BART6-3p |
18—UAAGGUUGGUCCAAUCCAUAGG—39 57—CGGGGAUCGGACUAGCCUUAGA—78 |
140,016–140,107 | |
| MI0003729 | BART7-5p BART7-3p |
15—CCUGGACCUUGACUAUGAAACA—36 51—CAUCAUAGUCCAGUGUCCAGGG—72 |
146,425–146,510 | |
| MI0003730 | BART8-5p BART8-3p |
14—UACGGUUUCCUAGAUUGUACAG—35 49—GUCACAAUCUAUGGGGUCGUAGA—71 |
146,759–146,840 | |
| MI0003731 | BART9-5p BART9-3p |
14—UACUGGACCCUGAAUUGGAAAC—35 52—UAACACUUCAUGGGUCCCGUAGU—74 |
146,946–147,032 | |
| MI0003732 | BART10-5p BART10-3p |
18—GCCACCUCUUUGGUUCUGUACA—39 53—UACAUAACCAUGGAGUUGGCUGU—75 |
147,304–147,393 | |
| MI0003733 | BART11-5p BART11-3p |
14—UCAGACAGUUUGGUGCGCUAGUUG—37 52—ACGCACACCAGGCUGACUGCC—72 |
147,524–147,609 | |
| MI0003734 | BART12 | 49—UCCUGUGGUGUUUGGUGUGGUU—70 | 147,888–147,970 | |
| MI0003735 | BART13-5p BART13-3p |
15—AACCGGCUCGUGGCUCGUACAG—36 52—UGUAACUUGCCAGGGACGGCUGA—74 |
148,512–148,597 | |
| MI0003736 | BART14-5p BART14-3p |
14—UACCCUACGCUGCCGAUUUACA—35 48—UAAAUGCUGCAGUAGUAGGGAU—69 |
148,731–148,815 | |
| MI0004988 | BART15 | 47—GUCAGUGGUUUUGUUUCCUUGA—68 | 139,507–139,584 | [86] |
| MI0004989 | BART16 | 20—UUAGAUAGAGUGGGUGUGUGCUCU—43 | 139,776–139,874 | |
| MI0004990 | BART17-5p BART17-3p |
22—UAAGAGGACGCAGGCAUACAAG—43 60—UGUAUGCCUGGUGUCCCCUUAGU—82 |
139,894–139,995 | |
| MI0004991 | BART18-5p BART18-3p |
31—UCAAGUUCGCACUUCCUAUACA—52 67—UAUCGGAAGUUUGGGCUUCGUC—88 |
145,932–146,050 | |
| MI0004992 | BART19-5p BART19-3p |
18—ACAUUCCCCGCAAACAUGACAUG—40 57—UUUUGUUUGCUUGGGAAUGCU—77 |
148,198–148,290 | |
| MI0004993 | BART20-5p BART20-3p |
21—UAGCAGGCAUGUCUUCAUUCC—41 56—CAUGAAGGCACAGCCUGUUACC—77 |
148,319–148,417 | |
| MI0010627 | BART21-5p BART21-3p |
12—UCACUAGUGAAGGCAACUAAC—32 46—CUAGUUGUGCCCACUGGUGUUU—67 |
145,503–145,578 | [83] |
| MI0010628 | BART22 | 43—UUACAAAGUCAUGGUCUAGUAGU—65 | 147,161–147,231 |
1 Numbers denote the start/end bases within the coordinate range that are predicted/known to produce mature miRNAs. 2 Coordinates mapped by original authors to prototypical wildtype genome (GenBank AJ507799.2) or B95-8 strain.