Table 2.

Genetic loci associated with effective tiller number were studied by genome-wide association.

Chr	Start	End	Year	Subpopulation	QTL	p-Value	Candidate/Known Gene
1	28312507	28635235	2021	Indica	qLETN1-2	9.7639 × 10−6	Os01g0690800
			2021	Indica	qHETN1-2	4.96655 × 10−6
			2022	Indica, Whole	qHETN1-2	3.05122 × 10−6
2	1925017	2258654	2021	Indica	qLETN2-1	3.77201 × 10−6
				Indica, Whole	qHETN2-1, qHETN2-3	8.0282 × 10−7
			2022	Whole	qLETN2-1	7.92919 × 10−6
2	20316453	20806338	2022	Indica, Whole	qLETN2-4, qLETN2-5, qLETN2-6, qLETN2-7	8.01316 × 10−7	Os02t0550300 Os02t0550700
				Indica, Whole	qNRI2-4, qNRI2-5, qNRI2-6	5.38504 × 10−7
3	28202203	28408332	2021	Indica	qLETN3-1	1.25578 × 10−6
			2022	Indica	qLETN3-1	7.8412 × 10−6
4	31125957	31325965	2021	Japonica, Whole	qLETN4-3	4.1416 × 10−6	NAL1 [30] Os04g0615700 Os04t0616300
			2022	Japonica, Whole	qLETN4-3	3.52586 × 10−6
5	18033644	18260106	2021	Indica	qLETN5-1	3.84225 × 10−6	OsCKX9 [31]
			2022	Indica	qLETN5-1	5.65649 × 10−7
5	20672878	20956221	2021	Whole	qNRI5-3	8.01541 × 10−6
			2022	Whole	qNRI5-3	8.29562 × 10−6
7	9167844	9368439	2021	Japonica	qLETN7-1	4.6369 × 10−6
			2022	Japonica	qLETN7-1	7.8421 × 10−6
7	27836562	28048531	2021	Indica	qNRI7-2	6.56564 × 10−6
			2022	Indica	qNRI7-2	5.6232 × 10−6
8	20505376	20723565	2021	Whole	qLETN8-1	8.65652 × 10−6
			2022	Whole	qLETN8-1	7.51026 × 10−6