TABLE 3.
Primers used only for sequencing
| Virus | Primera | Sequence (5′→3′) | Genomic positionb |
|---|---|---|---|
| Apoi | F5F230 (F) | GCTCTATGCTGATGACACCGC | 204 |
| Banzi | F8F74 (F) | ATGTGGCTTGGGGCTCGCTTT | 49 |
| F8F322 (F) | CTGAGCACCGACAACTGGCAT | 296 | |
| Cacipacore | F12F808 (F) | TTATGAAGGATGGAAGAAAGC | 779 |
| Jugra | F20F590 (F) | TTGGAGGTGAACGGAGTGAAC | 568 |
| F20F622 (F) | GTAATGGCAGTGAGCGGAGAT | 598 | |
| Kadam | F22F770 (F) | CTTTTGCTCCCACCACTTCCA | 741 |
| Potiskum | F31F353 (F) | TACAAGAACAAGGTGGTCAAA | 337 |
| F31F623 (F) | GCTGTGAGTGGTGATGATTGT | 604 | |
| F31F776 (F) | TCGCACCATTTCCACACGCTG | 757 | |
| Saboya | F34F464 (F) | TTGGGGAATGGGAGGAGAGCA | 704 |
| Uganda S | F44F581 (F) | TGGCTTGAGGTGAATGGCGTA | 565 |
| Sokuluk | F53F63 (F) | AAGAACACAGGGGCTCGGGAC | 410 |
| F53R160 (R) | GACGCCCTCTGCTTCTGCCAT | 487 | |
| F53R498 (R) | ATCCTCGCCTTCCCAATCAGC | 845 | |
| Carey Island | F56F152 (F) | ACTTTGTGGAGGTGGCGTGGA | 123 |
| F56F359 (F) | GGCATACAAAAACAAAGTGGC | 330 |
a
F, forward primer; R, reverse primer.
b
The number corresponds to the nucleotide position in the deposited sequence (Table 1) corresponding to the first (5′) base of each primer.