Table 4.

BLAST analysis of HTS de novo assembled contigs derived from managed and wild bees’ pooled samples.

Honey bee (Apis mellifera)
Contig	RNA	Position (nt)	Contig Size (bp)	* Mismatch	* INDELs	% ArLV1-IL-Bh aa	% ArLV1 aa	% Zymoseptoria Comovirus A aa	% AmCV aa
2688	1	124–492	368	7	0	99	82	82	98
3388	1	1327–1647	320	3	0	100	89	89	98
2241	1	1645–4430	2785	19	0	99	90	90	97
39_1	1	4362–5907	1545	26	0	99	83	83	94
39_3	2	1–3378	3378	56	4	99.8	79.4	79.9	92.19
Mining bee (Andrena)
3396	1	2715–3376	661	6	0	99.5	90.4	90.4	97.2
2094	1	3361–3624	263	2	0	100	89.7	89.7	98.8
3946	1	3642–4061	419	4	0	100	87.1	87.1	96.4
67_2	1	4164–5892	1728	30	1	99.6	85.2	85.2	94.6
2253	2	182–744	562	5	0	99	67	67	86
1218	2	959–1199	240	4	0	79	76	76	79
4073	2	1184–1501	317	6	0	99	66	68	90
67_1	2	1563–3443	1880	25	3	99	82	82	93
Long-horned bee (Eucera)
4418	1	4559–4820	261	7	0	99	92	92	98
2837	1	5051–5784	733	9	0	99	78	78	92
3346	2	498–744	246	2	0	99	92	93	95
2617	2	1057–1328	271	4	0	100	90	91	98
2924_1	2	1429–1634	205	5	0	97	53	77	90
2924_0	2	1612–2155	543	14	0	74	68	69	71
1924	2	2313–2926	613	9	0	97	79	79	95
4230	2	2912–3317	405	6	2	100	66	66	84
Masked bee (Hylaeus)
7428	1	3531–3924	393	6	0	85	73	73	80
9174	1	4032–4347	315	4	0	99	83	83	94
12,606	1	4704–4973	269	10	0	99	96	96	96
5150	1	5054–5597	543	7	0	100	90	90	99
12,033	2	822–1117	295	13	0	99	98	98	99
12,764	2	1548–1818	270	8	0	98	87	88	91
1842	2	1970–2208	238	2	0	100	86	86	94
4413	2	2193–3254	1061	23	1	98	78	89	93

* Mismatch and INDELs were determined on ArLV1-IL-Bh genome reference. ArLV1-IL-Bh, (OR840696, OR840697); ArLV1, (MH899120, MH899121); Zymoseptoria comovirus A (MK231051, MK231039); AmCV (OP972917-20); aa, denoted for amino acids.