Table 3:
%Identity/%Similarity for L. polyphemus proteins against Drosophila melanogaster and Daphnia pulex.
| Proteins | Drosophila melanogaster | Daphnia pulex | |||
|---|---|---|---|---|---|
| Core proteins | Length | Domains (%Identity/%Similarity) | Total | Domains (%Identity/%Similarity) | Total |
| PERA | 1,001 | PASa(40/53);PASb(44/63);PAC(66/82);PERIODC(N/A) | 26/34 | PASa(40/50);PASb(45/66);PAC(66/84);PERIODC(21/30) | 30/38 |
| PERB | 1,021 | PASa(37/56);PASb(44/55);PAC(75/86);PERIODC(N/A) | 25/31 | PASa(38/57);PASb(49/58);PAC(70/80);PERIODC(20/29) | 32/39 |
| PERC | 1,047 | PASa(38/56);PASb(45/65);PAC(68/82);PERIODC(N/A) | 25/32 | PASa(43/57);PASb(49/61);PAC(73/82);PERIODC(22/31) | 31/39 |
| TIM | 1,100 | TIMELESS(35/45) | 27/38 | TIMELESS(25/40) | 36/45 |
| CLK | 654 | bHLH(67/82);PASa(52/61);PASb(78/82);PAC(75/93) | 32/40 | bHLH(71/84);PASa(55/66);PASb(76/85);PAC(84/91) | 43/50 |
| CYC1 | 623 | bHLH(75/81);PASa(75/87);PASb(53/73);PAC(57/66) | 62/68 | bHLH(78/85);PASa(87/94);PASb(57/66);PAC(57/70) | 31/37 |
| CYC2 | 632 | bHLH(76/81);PASa(76/88);PASb(53/66);PAC(52/66) | 60/66 | bHLH(76/85);PASa(85/93);PASb(59/68);PAC(57/70) | 31/38 |
| npCRY2 | 549 | 6–4 Photolyase(N/A);FAD Binding 7(N/A) | N/A | 6–4 Photolyase(64/76);FAD Binding 7(84/91) | 70/79 |
| Accessory Proteins | |||||
| VRI | 439 | BRLZ(69/80) | 20/28 | BRLZ(68/75) | 42/43 |
| CWO | 536 | bHLH(82/86);ORANGE(32/39) | 16/22 | bHLH(88/95);ORANGE(34/46) | 23/25 |
| SLIMB1 | 533 | b-TrCP D(55/65);FBOX(85/93);WD40(92/92);WD40(84/98); WD40(97/97);WD40(94/94);WD40(97/100);WD40(92/97); WD40(95/95) | 73/78 | b-TrCP D(53/65);FBOX(75/85);WD40(92/95);WD40(84/95); WD40(87/87);WD40(95/97);WD40(95/100);WD40(89/97); WD40(100/100) | 74/80 |
| SLIMB2 | 528 | b-TrCP D(57/68);FBOX(88/93);WD40(92/92);WD40(84/89); WD40(97/97);WD40(95/95);WD40(97/100);WD40(92/97); WD40(92/95) | 74/79 | b-TrCP D(57/68);FBOX(78/85);WD40(92/92);WD40(84/95); WD40(87/87);WD40(95/97);WD40(95/100);WD40(89/97); WD40(97/100) | 76/82 |
| ARNT1 | bHLH(76/81);PASa(74/90);PASb(74/83);PAC(61/75) | 49/57 | bHLH(76/81);PASa(74/88);PASb(75/78);PAC(84/93) | 52/60 | |
| ARNT2 | bHLH(89/91);PASa(76/90);PASb(75/84);PAC(57/70) | 49/57 | bHLH(89/91);PASa(78/88);PASb(74/78);PAC(84/91) | 54/59 | |
| CK Iα | 402 | S TKc(78/84) | 79/84 | S TKc(64/71) | 46/52 |
| CK Iε | S TKc(75/81) | 53/58 | S TKc(73/77) | 64/67 | |
| CK IIα | 329 | S TKc(92/96) | 88/92 | S TKc(94/98) | 86/90 |
| CK IIβ | 198 | CKIIβ(90/93) | 84/86 | CKIIβ(93/95) | 84/86 |
| JET | 234 | LRR(12/35);LRR(15/41);LRR(31/50) | 41/48 | LRR(15/38);LRR(33/48);LRR(31/46) | 14/19 |
| SGG | 364 | S TKc(77/85) | 50/57 | S TKc(83/88) | 69/75 |
| PP1α | 330 | PP2Ac(94/97) | 88/91 | PP2Ac(96/99) | 90/93 |
| PP1β | 274 | PP2Ac(86/88) | 76/79 | PP2Ac(88/89) | 81/82 |
| PP2αMTS | 296 | PP2Ac(79/82) | 80/84 | PP2Ac(54/65) | 51/61 |
| PP2αWBT | 494 | B56(84/91) | 71/78 | B56(81/89) | 74/82 |
| PP2αTWS | 443 | WD40(85/97);WD40(90/93);WD40(93/98);WD40(93/95); WD40(87/90); WD40(93/94);WD40(87/92) | 73/79 | WD40(79/87);WD40(88/100);WD40(93/98);WD40(80/85); WD40(87/92); WD40(87/89);WD40(82/89) | 84/91 |
| Input Pathway Proteins | |||||
| CRY1 | 313† | FAD Binding 7(47/55) | N/A | FAD Binding 7(45/60) | N/A |
| Output Pathway Proteins | |||||
| NPFR | 213† | 7tM GPCR Srsx(53/66) | N/A | 7tM GPCR Srsx(49/61) | N/A |
| NPF | 95 | PAH(36/54) | 23/34 | PAH(41/54) | 29/37 |
| PDHR | 231 † | 7TM-2(40/57) | N/A | 7TM-2(46/63) | N/A |
†
indicates partial sequence.