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. 2024 Mar 12;19:11. doi: 10.1186/s13015-023-00245-z

Table 8.

Running times (seconds) for different subset sizes of SARS-CoV2 (parallel implementations)

Size (MB) Sacamats-par Libsais-par Big-bwt-par DS1-par DS2-par DS3-par
250 4.98 4.30 4.66 8.12 8.46 9.25
500 10.72 8.81 9.66 15.42 16.29 17.42
750 17.23 13.19 19.25 23.61 24.85 26.76
1000 24.67 17.77 25.96 33.31 34.03 36.08
2000 47.20 35.52 47.87 69.34 73.92 78.69
4000 110.64 98.22 94.50 205.25
6000 184.36 166.47 140.14