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. 2024 Feb 20;15(3):e02599-23. doi: 10.1128/mbio.02599-23

TABLE 2.

List of primers used for this study

Primer number Primer name Description Primer sequence (5′ to 3′)
AB001 3086 KO up FOR Knockout BT3086 in WT ATTAGCATTATGAGTCCCGAAGGAACATGGTAC
AB002 3086 KO up REV Knockout BT3086 in WT CTTGAACTCAACGCCTACA
AB003 3086 KO down FOR Knockout BT3086 in WT GGCGTTGAGTTCAAGACCTATCGTTTTTAGTTATTCCG
AB004 3086 KO down REV Knockout BT3086 in WT CTTGATATCGAATTCAAAGCCGTCCTGTATGAAAA
AB005 3087KO up FOR Knockout BT3087 in WT ATTAGCATTATGAGTATAATCACGGCTTTCCGTT
AB006 3087 KO up REV Knockout BT3087 in WT GGCAGTTGCAACGGAATA
AB007 3087 KO down FOR Knockout BT3087 in WT TCCGTTGCAACTGCCCTTGAATACTTGTTTATTGTTTTACAATTG
AB008 3087 KO down REV Knockout BT3087 in WT CTTGATATCGAATTCGGCGATAATGGCTGGGG
AB009 3088 KO up FOR Knockout BT3088 in WT ATTAGCATTATGAGTCTTCAATGCCCCGAAACA
AB010 3088 KO up REV Knockout BT3088 in WT ACAAGTATTCAAGATGAAGAAGATAATATA
AB011 3088 KO down FOR Knockout BT3088 in WT ATCTTGAATACTTGTCATATGATCTGTCTAAATGAATGATTG
AB012 3088 KO down REV Knockout BT3088 in WT CTTGATATCGAATTCCGGCAGTACGGAATACGA
AB013 3089 KO up FOR Knockout BT3089 in WT ATTAGCATTATGAGTGCCGTAGTTCTTCTCCG
AB014 3089 KO up REV Knockout BT3089 in WT TTGCTTTTACAATCATTCATTTAGAC
AB015 3089 KO down FOR Knockout BT3089 in WT TGATTGTAAAAGCAATTTCTTCCTCCTGATTTAAAAGTT
AB016 3089 KO down REV Knockout BT3089 in WT CTTGATATCGAATTCCAATTCATACGTGACCATGC
AB017 3090 KO up FOR Knockout BT3090 in WT ATTAGCATTATGAGTGATTGGGCGCCAGCG
AB018 3090 KO up REV Knockout BT3090 in WT ATCAGGAGGAAGAAAATGAAAAAGAAAC
AB019 3090 KO down FOR Knockout BT3090 in WT TTTCTTCCTCCTGATGTACATCAATTTAAAGTTAATATTAGGATTACT
AB020 3090 KO down REV Knockout BT3090 in WT CTTGATATCGAATTCGACTCCAATTCGCAACTGAA
AB021 3091 KO up FOR Knockout BT3091 in WT ATTAGCATTATGAGTTTTAATGGTTACATTGTCCCC
AB022 3091 KO up REV Knockout BT3091 in WT GAAATCCACTACTTTTTTAGCAC
AB023 3091 KO down FOR Knockout BT3091 in WT AAAGTAGTGGATTTCAGCGCCATATGTATTATATCTGC
AB024 3091 KO down REV Knockout BT3091 in WT CTTGATATCGAATTCTATAAAAATATTGATGGAGCAATGGC
AB025 4581 KO up FOR Knockout BT4581 in WT ATTAGCATTATGAGTAGAAATATATCAGCATTAAACTTCTCC
AB026 4581 KO up REV Knockout BT4581 in WT GATATAAATGAATTAGTTAATAATCATATGGC
AB027 4581 KO down FOR Knockout BT4581 in WT TAATTCATTTATATCGACGCGACTAAAACGATTGTTC
AB028 4581 KO down REV Knockout BT4581 in WT CTTGATATCGAATTCACCGGAGTACGTCCCCAT
AB046 pET29_BT3086 FOR Expression of BT3086 ATCGAATTCGGGATCCGAAAACGCAAAAAGTATATGTACC
AB047 pET29_BT3086 REV Expression of BT3086 GTGGTGGTGGTGCTCGAGTCATAAACGCAGGGAAATCC
AB050 pET29_BT3087 FOR Expression of BT3087 GATCGAATTCGGGATCCTGCAGCGACGATCATGA
AB051 pET29_BT3087 REV Expression of BT3087 GTGGTGGTGGTGCTCGAGTTATTCAGCTACAATCATTGTCCA
AB052 pET29_BT4581 FOR Expression of BT4581 GGATCGAATTCGGGATCCGAAAGTATCACTTCTCCTGACG
AB053 pET29_BT4581 REV Expression of BT4581 TGGTGGTGGTGGTGCTCGAGTCATTTCCATTTCTTAATTGATTTCC
AB095 3086 3087 KO up FOR Knockout BT3087 in BT3086 background GATTAGCATTATGAGTAGAAATATGAAGGCAACCGT
AB096 3086 3087 KO up REV Knockout BT3087 in BT3086 background AAACAAGTATTCAAGGGCAGTTGCAACGGAAT
AB097 3086 3087 KO down FOR Knockout BT3087 in BT3086 background CTTGAATACTTGTTTATTGTTTTACAATTG
AB098 3086 3087 KO down REV Knockout BT3087 in BT3086 background CTTGATATCGAATTCGGCGATAATGGCTGGG