Table 3.

Significative clusters identified with HAllA for taxonomy and infectious diseases parameters data. Shifts in species abundances are indicated inside parenthesis.

Cluster rank	Cluster X	Cluster Y	Best adjusted p-value
1	IL-12p40 IL-6 LBP IFNγ Viral load	Bacteroidales bacterium M7 (up at D7)	0.0021
2	IFNγ	Lactobacillus johnsonii (down at D7)	0.0021
3	IFNγ	Lactobacillus reuteri (down at D7)	0.0021
4	IFNγ	Lactobacillus taiwanensis (down at D7)	0.004
5	LBP	Lactobacillus johnsonii (down at D7)	0.024
6	Il1b	Bacteroidales bacterium M11 (down at D7)	0.033
7	LBP	Lactobacillus taiwanensis (down at D7)	0.033
8	LBP	Lactobacillus reuteri (down at D7)	0.043
9	IFNγ	Parabacteroides goldsteinii (up at D7)	0.048