Table 3.

Comparison of CryoTransformer with crYOLO and Topaz in terms of precision, recall, F1-score, and dice score of particle picking on the micrographs of six independent test proteins.

EMPIAR ID	Type of protein	Number of micrographs	No. of particles in ground truth (CryoPPP dataset)	Precision			Recall			F1 score			Dice score
				CrYOLO	Topaz	CryoTransformer	CrYOLO	Topaz	CryoTransformer	CrYOLO	Topaz	CryoTransformer	CrYOLO	Topaz	CryoTransformer
10017	β-galactosidase	84	49 391	0.695	0.57	0.745	0.024	0.998	0.587	0.046	0.726	0.657	0.041	0.694	0.623
10081	Transport	300	39 352	0.405	0.736	0.860	0.18	0.965	0.889	0.25	0.835	0.874	0.214	0.825	0.823
10093	Membrane	295	56 394	0.574	0.617	0.560	0.054	0.537	0.689	0.098	0.574	0.618	0.086	0.504	0.600
10345	Signaling	295	15 894	0.543	0.526	0.744	0.134	0.981	0.864	0.215	0.685	0.799	0.111	0.659	0.684
10532	Viral	300	87 933	0.715	0.672	0.813	0.201	0.976	0.665	0.313	0.796	0.732	0.239	0.757	0.614
11056	Transport	305	125 908	0.513	0.731	0.853	0.214	0.832	0.683	0.302	0.778	0.758	0.284	0.692	0.679
	Average			0.574	0.642	0.7625	0.1345	0.8815	0.7295	0.204	0.732	0.740	0.163	0.689	0.671