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. 2024 Mar 14;14(13):8615–8640. doi: 10.1039/d3ra07380g

Interaction types and amino acids involved in the agonism (iperoxo, 77-LH-28-1) or antagonism (atropine, tiotropium) at M1-AChR. All graphical presentations of the docked complexes were analysed using BIOVIA discovery studio visualizer.

Ligand Hydrogen bond (HB) interaction Bond length (Å) for HB interaction Hydrophobic interaction Pi–cation interaction Pi–sigma interaction Pi–alkyl interaction Pi–sulfur interaction
Iperoxo Ser109 2.9 Tyr404 Tyr404 (4.4 Å) Tyr404 (3.5 Å)
Tyr106
Tyr381
Trp378
77-LH-28-1 Asp105 1.9 Cys407 Tyr404 (4.2 Å) Tyr381 (4.8 Å)
Ser109 Trp378 (4.6 Å)
Tyr82
Tyr106
Tyr381
Tyr404
Trp378
Atropine Asn382 2.4 Ala196 Trp378 (4.3 Å) Ala196 (3.7 Å)
Ser109 3.1 Ser109 Val113 (5.4 Å)
Tyr106
Tyr381
Tyr404
Val113
Tiotropium Asn382 2 Ala193 Tyr404 (4 Å) Tyr381 (3.7 Å) Ala193 (4.6 Å) Phe197 (5.9 Å)
Ala196 Tyr404 (3.4 Å) Ala196 (3.6 Å) Tyr381 (5.3 Å)
Tyr106 Trp378 (5 Å)
Tyr381
Tyr404