Table 2.
Secondary metabolite biosynthesis gene clusters identified in the genome of the strain RG38T with antiSMASH (manually curated).
| Metabolite class (type) | Location (nt) | Clusters | Most similar known biosynthetic gene cluster (Percentage of similarity) | (%) |
|---|---|---|---|---|
| T2PKS | 147,466–219,939 | 2 | Chromomycin A3 | 100 |
| 285,713 - 374,281 | Spore pigment | 66 | ||
| Oligosaccharide | 147,466–219,939 | 1 | Chromomycin A3 | 100 |
| Phosphonate | 293,972 - 358,530 | 1 | Dehydrophos | 35 |
| LAP | 293,972 - 358,530 | 1 | Dehydrophos | 35 |
| thiopeptide | 293,972 - 358,530 | 1 | Dehydrophos | 35 |
| RRE-containing | 293,972 - 358,530 | 1 | Dehydrophos | 35 |
| RiPP-like | 507,011 - 518,271 | 2 | - | - |
| 1,691,581 - 1,701,796 | Informatipeptin | 42 | ||
| Terpene | 530,371 - 550,743 | 5 | Geosmin | 100 |
| 1,084,332 - 1,110,388 | Hopene | 92 | ||
| 1,662,287 - 1,683,318 | Versipelostatin | 5 | ||
| 566,242 - 630,768 | Carotenoid | 54 | ||
| 399,515 - 420,594 | Albaflavenone | 100 | ||
| NRPS | 574,731 - 620,282 | 8 | CDA1b / CDA2a / CDA2b / CDA3a / CDA3b / CDA4a / CDA4b (Ca + −dependent lipopeptide) | 5 |
| 1,426,743 - 1,516,420 | Cysteoamide | 18 | ||
| 147,207 - 210,648 | Herboxidiene | 4 | ||
| 446,669 - 495,414 | Coelichelin | 81 | ||
| 566,242 - 630,768 | - | - | ||
| 727,279 - 774,508 | Streptobactin | 64 | ||
| 122,174- 185,958 | Vazabitide A | 19 | ||
| 130,102 - 184,189 | Caniferolide A/ B/C/ D | 4% | ||
| Siderophore | 656,754 - 670,047 | 1 | - | - |
| Lantipeptide class i | 147,207 - 210,648 | 2 | Herboxidiene | 4 |
| 145,629 - 171,957 | - | - | ||
| Lantipeptide class ii | 147,207 - 210,648 | 1 | Herboxidiene | 4 |
| transAT-PKS | 318,727 - 407,049 | 1 | Anthracimycin | 100 |
| Betalactone | 416,391 - 440,650 | 2 | - | - |
| 285,713 - 374,281 | - | - | ||
| Indole | 678,989 - 700,113 | 1 | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | 33 |
| Butyrolactone | 818,080 - 829,021 | 1 | - | - |
| Linaridin | 66,758 - 87,754 | 1 | Legonaridin | 66 |
| Melanin | 311,208–321,753 | 1 | Melanin | 60 |
| Ectoine | 75,206 - 85,604 | 1 | Ectoine | 100 |
| Lantipeptide class IV | 145,977 - 168,661 | 1 | Venezuelin | 100 |