Table 2.
Interacting residues between DENV-2 peptide and SH3 domain
| Viral protein | Peptide | Receptor residue | DENV-2 peptide residue | Interaction dist. (Å) | Interaction type |
|---|---|---|---|---|---|
| Envelope | 417–423 | SER 14 [OG] | THR 6 [OG1] | 3.81649 | H bond |
| NS1 | 808–814 | LYS 13[ N] | SER 6[ OG] | 2.74 | H bond |
| GLN 11[ N] | PRO 7[ O] | 2.62 | H bond | ||
| LYS 13[ O] | GLU 5[ N] | 3.90 | H bond | ||
| TYR 10[ OH] | SER 6[ N] | 3.78 | H bond | ||
| 811–816 | GLN 11[ N] | PRO 1[ O] | 3.54 | H bond | |
| TYR 10[ OH] | SER 3[ OG] | 2.62 | H bond | ||
| ASP 9[ O] | PRO 1[ N] | 3.61 | H bond | ||
| GLU 17[ OE1] | SER 3[ OG] | 3.72 | H bond | ||
| SER 14[ OG] | LYS 6[ N] | 2.90 | H bond | ||
| NS3 | 1479–1485 | TYR 10[ OH] | TRP 2[ O] | 3.68 | H bond |
| TYR 10[ OH] | ASP 3[ OD1] | 3.49 | H bond | ||
| SER 14[ N] | ASP 3[ OD2] | 2.86 | H bond | ||
| 1480–1486 | ASN 30[ ND2] | TRP 1[ O] | 3.68 | H bond | |
| SER 14[ OG] | B:SER 5[ OG] | 3.68 | H bond | ||
| SER 14[ OG] | PRO 6[ O] | 3.86 | H bond | ||
| THR 32[ OG1] | TRP 1[ NE1] | 3.52 | H bond | ||
| 1894–1900 | LYS 13[ NZ] | ALA 1[ O] | 3.09 | H bond | |
| ASN 30[ ND2] | ASP 6[ OD1] | 3.58 | H bond | ||
| NS5 | 2694–2700 | SER 14[ OG] | VAL 4[ O] | 3.89 | H bond |
| ASP 35[ OD2] | ARG 5[ NH1] | 2.66 | H bond | ||
| Salt bridge | |||||
| 3068–3074 | TYR 8[ OH] | VAL 1[ N] | 3.71 | H bond | |
| TYR 10[ OH] | VAL 4[ N] | 3.07 | H bond | ||
| 3154–3160 | ARG 16[ NH2] | ASP 1[ OD2] | 3.38 | H bond | |
| Salt bridge | |||||
| SER 14[ N] | LYS 6[ O] | 2.74 | H bond | ||
| TYR 10[ OH] | PRO 7[ OXT] | 2.60 | H bond | ||
| ASN 33[ OD1] | ASP 1[ N] | 3.28 | H bond | ||
| GLU 17[ OE2] | LYS 6[ N] | 2.67 | H bond | ||
| TYR 10[ OH] | PRO 7[ N] | 3.00 | H bond | ||
| GLU 17[ OE2] | PRO 7[ N] | 3.80 | H bond |