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. 2024 Mar 14;206(4):162. doi: 10.1007/s00203-024-03892-x

Table 2.

Interacting residues between DENV-2 peptide and SH3 domain

Viral protein Peptide Receptor residue DENV-2 peptide residue Interaction dist. (Å) Interaction type
Envelope 417–423 SER 14 [OG] THR 6 [OG1] 3.81649 H bond
NS1 808–814 LYS 13[ N] SER 6[ OG] 2.74 H bond
GLN 11[ N] PRO 7[ O] 2.62 H bond
LYS 13[ O] GLU 5[ N] 3.90 H bond
TYR 10[ OH] SER 6[ N] 3.78 H bond
811–816 GLN 11[ N] PRO 1[ O] 3.54 H bond
TYR 10[ OH] SER 3[ OG] 2.62 H bond
ASP 9[ O] PRO 1[ N] 3.61 H bond
GLU 17[ OE1] SER 3[ OG] 3.72 H bond
SER 14[ OG] LYS 6[ N] 2.90 H bond
NS3 1479–1485 TYR 10[ OH] TRP 2[ O] 3.68 H bond
TYR 10[ OH] ASP 3[ OD1] 3.49 H bond
SER 14[ N] ASP 3[ OD2] 2.86 H bond
1480–1486 ASN 30[ ND2] TRP 1[ O] 3.68 H bond
SER 14[ OG] B:SER 5[ OG] 3.68 H bond
SER 14[ OG] PRO 6[ O] 3.86 H bond
THR 32[ OG1] TRP 1[ NE1] 3.52 H bond
1894–1900 LYS 13[ NZ] ALA 1[ O] 3.09 H bond
ASN 30[ ND2] ASP 6[ OD1] 3.58 H bond
NS5 2694–2700 SER 14[ OG] VAL 4[ O] 3.89 H bond
ASP 35[ OD2] ARG 5[ NH1] 2.66 H bond
Salt bridge
3068–3074 TYR 8[ OH] VAL 1[ N] 3.71 H bond
TYR 10[ OH] VAL 4[ N] 3.07 H bond
3154–3160 ARG 16[ NH2] ASP 1[ OD2] 3.38 H bond
Salt bridge
SER 14[ N] LYS 6[ O] 2.74 H bond
TYR 10[ OH] PRO 7[ OXT] 2.60 H bond
ASN 33[ OD1] ASP 1[ N] 3.28 H bond
GLU 17[ OE2] LYS 6[ N] 2.67 H bond
TYR 10[ OH] PRO 7[ N] 3.00 H bond
GLU 17[ OE2] PRO 7[ N] 3.80 H bond