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Microbiota composition and community diversity of the study samples. (A) Relative abundances of microbiota at the species level in LTRs of PJP, after PJP recovery, and control groups. (B) PCA of microbial communities revealed that the community composition of lung microbiota was distinct in BALF from LTRs among the three groups. (C, D and E) Alpha diversity of the lung microbiota in the three groups, measured by Richness (C), Shannon (D), and Evenness (E) indices
