Table 1 -.

Key datasets and resources used in this study.

Dataset/Key Resource	Citation	Version	Notes
Viral Zone: List of Human infecting viruses	Masson et al.21
NCBI Taxonomy: Phylogenetic Information of Pathogens	Schoch et al.22
KEGG: Biological Pathway Gene Sets	Kanehisa and Goto23	Release 109.0 (2024/02)
Human Protein Atlas: Cell Type, Tissue, and Organ System Protein Expression	Uhlén et al.24	Version 22.0 [2022–12–07]	Tissue expression was further grouped into organ system with this mapping provided with the source code.
Uniprot: Pathogen and Human Proteomes	UniProt Consortium29		See Table S1 for full list of proteomes used.
List of EBV Latent Proteins	Kang et al.30		Table 1 of Kang et al.30
Human Thymus Gene Expression Data set	Gabrielsen et al.25		Table S3 from Gabrielsen et al.25
Multiple Sclerosis Phip-seq Dataset	Zamecnik et al.26