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. 1998 Jan;72(1):739–748. doi: 10.1128/jvi.72.1.739-748.1998

TABLE 1.

Hydrogen bonds between the antigenic peptide A15 and the Fab fragment in complexes between A15 and 4C4 or SD6a

MAb Bond interaction site in:
Location Distance (Å)
FMDV C-S8c1 peptide MAb Fab fragment
4C4 Thr137 N Arg54 Nη2 L2 2.6
Thr137 O Asp104 N H3 3.2
Thr137 Oγ1 Asp34 Nδ2 L1 2.9
Ser139 Oγ Asn96 Oδ1 L3 3.4
Asp143 O Tyr59 Oη H2 3.4
Asp143 Oδ1 Arg9 Nη2 H3 2.7
Asp143 Oδ2 Arg99 Nη1 H3 2.8
Asp143 Oδ2 Thr50 Oγ1 H2 3.0
His146 Nδ1 Tyr59 Oη H2 2.6
His146 Nδ2 Thr33 Oγ H1 3.2
His146 Nδ2 Ser52 Oγ H2 2.8
SD6 Tyr136 Oη Glu100 Oɛ2 H3 2.6
Tyr136 Oη Gly103 N H3 3.2
Thr137 O Asp104 N H3 2.7
Ser139 Oγ Ser31 Oγ L1 3.2
Ser139 Oγ Asn96 Oδ1 L3 3.3
Arg141 O Glu97 N L3 2.6
Arg141 Nɛ Glu97 Oɛ1 L3 3.1
Asp143 O Tyr59 Oη H2 3.4
Asp143 Oδ1 Arg99 Nη2 H3 3.3
Asp143 Oδ2 Arg99 Nη1 H3 3.2
Asp143 Oδ2 Thr50 Oγ1 H2 2.6
His146 Nδ1 Tyr59 Oη H2 2.7
His146 Nδ2 Ser52 Oγ H2 3.2
His146 Nδ2 Ser53 Oγ H2 2.8
a

Procedures for structure determination are detailed in Materials and Methods. The amino acid sequences of antigenic peptide A15 and of the variable regions of MAbs 4C4 and SD6 are given in Fig. 1