TABLE 1.
Hydrogen bonds between the antigenic peptide A15 and the Fab fragment in complexes between A15 and 4C4 or SD6a
| MAb | Bond interaction site in:
|
Location | Distance (Å) | |
|---|---|---|---|---|
| FMDV C-S8c1 peptide | MAb Fab fragment | |||
| 4C4 | Thr137 N | Arg54 Nη2 | L2 | 2.6 |
| Thr137 O | Asp104 N | H3 | 3.2 | |
| Thr137 Oγ1 | Asp34 Nδ2 | L1 | 2.9 | |
| Ser139 Oγ | Asn96 Oδ1 | L3 | 3.4 | |
| Asp143 O | Tyr59 Oη | H2 | 3.4 | |
| Asp143 Oδ1 | Arg9 Nη2 | H3 | 2.7 | |
| Asp143 Oδ2 | Arg99 Nη1 | H3 | 2.8 | |
| Asp143 Oδ2 | Thr50 Oγ1 | H2 | 3.0 | |
| His146 Nδ1 | Tyr59 Oη | H2 | 2.6 | |
| His146 Nδ2 | Thr33 Oγ | H1 | 3.2 | |
| His146 Nδ2 | Ser52 Oγ | H2 | 2.8 | |
| SD6 | Tyr136 Oη | Glu100 Oɛ2 | H3 | 2.6 |
| Tyr136 Oη | Gly103 N | H3 | 3.2 | |
| Thr137 O | Asp104 N | H3 | 2.7 | |
| Ser139 Oγ | Ser31 Oγ | L1 | 3.2 | |
| Ser139 Oγ | Asn96 Oδ1 | L3 | 3.3 | |
| Arg141 O | Glu97 N | L3 | 2.6 | |
| Arg141 Nɛ | Glu97 Oɛ1 | L3 | 3.1 | |
| Asp143 O | Tyr59 Oη | H2 | 3.4 | |
| Asp143 Oδ1 | Arg99 Nη2 | H3 | 3.3 | |
| Asp143 Oδ2 | Arg99 Nη1 | H3 | 3.2 | |
| Asp143 Oδ2 | Thr50 Oγ1 | H2 | 2.6 | |
| His146 Nδ1 | Tyr59 Oη | H2 | 2.7 | |
| His146 Nδ2 | Ser52 Oγ | H2 | 3.2 | |
| His146 Nδ2 | Ser53 Oγ | H2 | 2.8 | |
Procedures for structure determination are detailed in Materials and Methods. The amino acid sequences of antigenic peptide A15 and of the variable regions of MAbs 4C4 and SD6 are given in Fig. 1.