Table 1.
Extended full-length sequenced HLA class I alleles (Table 1, part A) and class II alleles (Table 1, part B) with the EMBL-ENA accession numbers, IPD-IMGT/HLA submission numbers and the number of coding and non-coding nucleotides added to the database
| HLA allele | Compared to | EMBL-ENA accession number | IPD-IMGT/HLA submission number | Coding nucleotides added | Non-coding nucleotides added |
|---|---|---|---|---|---|
| Part A | |||||
| A*03:13 | A*03:01:01:01 | OW739111 | HWS10061654 | 552a | 2402 |
| A*03:182 # | A*03:01:01:01 | OW739112 | HWS10061658 | 86b | 2402 |
| A*24:121 | A*24:02:01:01 | OW739113 | HWS10061660 | 552a | 2379 |
| A*33:03:07 | A*33:01:01:01 |
HWS10061648 HWS10065531 |
552a | 2419 | |
| B*07:23 | B*07:02:01:01 | OW738604 | HWS10061722 | 543a | 2670 |
| B*07:24 | B*07:02:01:01 |
HWS10061662 HWS10065533 |
543a | 2894 | |
| B*08:01:05 | B*08:01:01:01 | OW738598 | HWS10061664 | 267c | 1763 |
| B*15:107 | B*15:01:01:01 | OW738599 | HWS10061666 | 543a | 2865 |
| B*18:34 # | B*18:01:01:01 |
HWS10061724 HWS10065633 |
543a | 3750 | |
| B*27:23 | B*27:01 |
HWS10061684 HWS10065535 |
543a | 2953 | |
| B*40:38 | B*40:01:02:01 |
HWS10061680 HWS10065635 |
543a | 2894 | |
| B*44:13 | B*44:02:01:01 | OW738602 | HWS10061686 | 0 | 2223 |
| B*44:22 | B*44:02:01:01 |
HWS10061690 HWS10065549 |
543a | 2894 | |
| B*44:90 | B*44:02:01:01 | OW738605 | HWS10061720 | 543a | 2214 |
| B*51:136 | B*51:01:01:01 | OW738607 | HWS10061738 | 77d | 2897 |
| B*53:06 # | B*53:01:01:01 | OX421017 | HWS10065637 | 543a | 2765 |
| C*03:04:19 # | C*03:04:01:01 |
HWS10061742 HWS10065585 |
555a | 3102 | |
| C*06:11 | C*06:02:01:01 | OW738945 | HWS10061748 | 555a | 3079 |
| C*16:201 # | C*16:01:01:01 |
HWS10061744 HWS10065605 |
555a | 3017 | |
| Part B | |||||
| DQA1*01:06 # | DQA1*01:01:01:01 | OW849871 | HWS10061752 | 519e | 4915 |
| DQA1*04:04 # | DQA1*04:01:01:01 | OW849870 | HWS10061754 | 240f | 5024 |
| DQB1*03:114 # | DQB1*03:01:01:01 | OW849941 | HWS10061756 | 234 g | 6242 |
| DQB1*06:03:11 # | DQB1*06:01:01:01 | OW849942 | HWS10061768 | 516 h | 6035 |
| DQB1*06:73 # | DQB1*06:01:01:01 | OW849944 | HWS10061770 | 516 h | 6120 |
| DQB1*06:286 # | DQB1*06:01:01:01 | OW849943 | HWS10061782 | 14i | 6125 |
| DPA1*01:03:14 # | DPA1*01:03:01:01 | OW849872 | HWS10061750 | 100j | 4706 |
In some cases, the 5′ and 3′ UTR sequences were separately submitted, revealing two different submission numbers in these cases. All alleles were compared with the first allele of the same allele group; a hash symbol behind the allele indicates that differences were found between the non-coding (5′ UTR/introns/3′ UTR) sequences of the full-length sequenced HLA allele and the reference allele of comparison
aCoding sequence of only exons 2 and 3 are known, addition of all other exons (1, 4, 5, 6, 7, 8 for HLA-A and -C; 1, 4, 5, 6, 7 for HLA-B)
bExons 6, 7, and 8 added
cExons 1, 5, 6, and 7 added
dExons 6 and 7 added
eExons 1, 3, and 4 added
fExons 1 and 4 added
gExons 1, 4, 5, and 6 added
hExons 1, 3, 4, 5, and 6 added
iExon 6 added
jExon 1 added