Table 5.
HLA class I alleles extended with 5′ and 3′ UTR sequences with the EMBL-ENA accession numbers, IPD-IMGT/HLA submission numbers and the number of non-coding nucleotides for 5′ and 3′ UTR added to the database
| HLA allele | Compared to | EMBL-ENA accession number | IPD-IMGT/HLA submission number | Non-coding nucleotides added 5′ UTR | Non-coding nucleotides added 3′ UTR | Differences in extended sequence |
|---|---|---|---|---|---|---|
| A*02:01:01:48 | A*02:01:01:01 | OX421037 | HWS10065285 | 0 | 185 | |
| A*29:95 | A*29:01:01:01 | OX421046 | HWS10065287 | 150 | 231 | |
| B*07:02:01:32 | B*07:02:01:01 | OX421012 | HWS10065289 | 248 | 1022 | |
| B*07:06:01:01 | B*07:02:01:01 | OX463247 | HWS10065965 | 0 | 659 | T3358C, C3698G |
| B*07:436 | B*07:02:01:01 | OX421031 | HWS10065291 | 0 | 659 | C3053T, C3129T, G3341A, T3358C, T3472C, T3576C, A3636G |
| B*08:09 | B*08:01:01:01 | OX421023 | HWS10065293 | 0 | 660 | |
| B*14:81 | B*14:02:01:01# | OX421015 | HWS10065295 | 248 | 986 | |
| B*15:03:01:01 | B*15:01:01:01 | OX421050 | HWS10065297 | 284 | 1022 | C2902T, C3174T, T3524C, G3542A, C3622T, C3681A |
| B*15:07:01:02 | B*15:01:01:01 | OX421032 | HWS10065299 | 16 | 766 | |
| B*15:13:01 | B*15:01:01:01 | OX421014 | HWS10065301 | 16 | 1011 | T3485C, T3524C, C3622T, C3681A |
| B*15:37 | B*15:01:01:01 | OX421035 | HWS10065303 | 57 | 777 | T3524C, G3542A, C3622T, C3681A |
| B*18:01:01:18 | B*18:01:01:01 | OX421036 | HWS10065305 | 0 | 659 | C3358T |
| B*18:18:01:02 | B*18:01:01:01 | OX421052 | HWS10065309 | 0 | 983 | T3014C, C3358T, C3472T, C3576T, C3609T, C3668A |
| B*18:144 | B*18:01:01:01 | OX421022 | HWS10065307 | 0 | 670 | C3358T, C3472T, C3576T, C3609T, C3668A |
| B*27:06:01:01 | B*27:04:01# | OX421057 | HWS10065311 | 0 | 659 | T3509A, G3531A |
| B*35:05:01:01 | B*35:01:01:02# | OX421028 | HWS10065313 | 0 | 129 | C3604T, C3611T |
| B*35:30:01:01 | B*35:01:01:02# | OX421047 | HWS10065315 | 0 | 984 | A3188C, T3255G, A3259G, G3317A, T3362C, G3363A, T3377G, G3381T, T3389C, G3416C, T3439C, T3461C, C3604T, C3611T |
| B*40:23 | B*40:01:02:01# | OX421021 | HWS10065537 | 0 | 659 | |
| B*40:27:01 | B*40:02:01:01 | OX421054 | HWS10065539 | 0 | 661 | |
| B*41:02:01:05 | B*42:01:01:01#a | OX421040 | HWS10065541 | 0 | 1005 | |
| B*44:02:01:14 | B*44:02:01:01 | OX421033 | HWS10065543 | 0 | 659 | |
| B*44:03:01:14 | B*44:02:01:01 | OX421055 | HWS10065545 | 0 | 660 | T3412G, T3472C, T3506A, G3523A |
| B*44:04 | B*44:02:01:01 | OX421048 | HWS10065547 | 16 | 659 | T3412G, T3472C, T3506A, G3523A |
| B*49:01:01:02 | B*49:01:01:01 | OX421056 | HWS10065551 | 0 | 659 | |
| B*51:01:01:14 | B*51:01:01:01 | OX421020 | HWS10065553 | 131 | 811 | T3525C, G3702C |
| B*51:01:01:25 | B*51:01:01:01 | OX421034 | HWS10065555 | 27 | 679 | G3702C |
| B*51:01:01:31 | B*51:01:01:01 | OX421045 | HWS10065557 | 0 | 699 | C3439T, C3461T, C3613T, G3702C |
| B*56:01:01:03 | B*56:01:01:15# | OX463248 | HWS10065969 | 0 | 659 | |
| B*81:01:01:04 | B*81:01:01:01b | OX421058 | HWS10065559 | 248 | 1022 | |
| C*02:02:02:06 | C*02:02:02:01 | OX421019 | HWS10065561 | 0 | 235 | |
| C*02:02:02:14 | C*02:02:02:01 | OX421044 | HWS10065569 | 192 | 638 | |
| C*02:02:02:20 | C*02:02:02:01 | OX421016 | HWS10065571 | 212 | 638 | |
| C*02:02:02:27 | C*02:02:02:01 | OX421027 | HWS10065573 | 431 | 797 | |
| C*02:06:01 | C*02:02:02:01 | OX421038 | HWS10065575 | 201 | 652 | |
| C*03:02:02:02 | C*03:02:02:01#c | OX421051 | HWS10065577 | 212 | 589 | A3196G, G3200C, C3305T, G3325T, A3372C, 3387_3388insG, C3423T, G3429A, C3439T, G3498A |
| C*03:03:01:22 | C*03:02:02:01#c | OX421018 | HWS10065581 | 431 | 801 | A3196G, G3200C, C3305T, G3325T, A3372C, 3387_3388insG, C3423T, G3429A, C3439T, G3498A |
| C*03:04:02:01 | C*03:02:02:01#c | OX421042 | HWS10065583 | 0 | 278 | A3196G, G3200C, C3305T, G3325T, A3372C, 3387_3388insG, C3423T, G3429A, C3439T, G3498A |
| C*04:01:01:19 | C*04:01:01:06# | OX421049 | HWS10065587 | 111 | 620 | |
| C*04:01:01:38 | C*04:01:01:06# | OX421029 | HWS10065589 | 431 | 820 | |
| C*06:02:01:21 | C*06:02:01:01 | OX421024 | HWS10065591 | 431 | 819 | G3033C |
| C*07:02:01:44 | C*07:01:01:01 | OX421030 | HWS10065593 | 435 | 819 | G3000A, T3001C |
| C*07:46 | C*07:01:01:01 | OX421053 | HWS10065595 | 204 | 658 | |
| C*12:03:01:28 | C*12:02:02:01 | OX421039 | HWS10065597 | 431 | 794 | C3638T, G3664A |
| C*12:143 | C*12:02:02:01 | OX421025 | HWS10065599 | 0 | 291 | C3638T, G3664A |
| C*12:167 | C*12:02:02:01 | OX421013 | HWS10065601 | 373 | 794 | G3664A |
| C*15:06:01:01 | C*15:02:01:01 | OX421026 | HWS10065603 | 0 | 291 | |
| C*17:01:01:05 | C*17:01:01:02 | OX421041 | HWS10065607 | 0 | 286 |
The extended sequences were compared with the first allele of the same allele group, and the differences are depicted in the last column. A hash symbol behind the reference allele indicates that this is not the first allele of the allele group for which the genomic sequence is known, because the first allele is missing part of the 3′ UTR region
aThis B*41:02:01:05 allele had to be compared with another allele group, because there was no B*41 in the database with known sequence up to position 3698
bThe last 131 bp of this B*81:01:01:04 allele could not be compared to any B*81 allele, because it was unknown for all B*81 alleles
cThe allele C*03:02:02:01 was the first allele of the C*03 allele group of which the full-length sequence is known, but this allele together with 03:544 and 03:614 showed these 10 differences with the alleles studied, all other C*03 alleles showed sequences identical to the 3 studied alleles