Table 1. Identification of matS sequence and Ter domain over Gammaproteobacteria.
| Ter size* (Kb) | matS in the ter† | Chromsomosome size (Kb) | matS mean by 100 Kb of Ter ‡ | Size Ter/size chromosome § (%) | |
|---|---|---|---|---|---|
| Enterobacterals | |||||
| Escherichia coli | 1037 | 31 | 4641 | 3 | 22 |
| Salmonella enterica serovar | 722 | 27 | 4822 | 3.7 | 15 |
| Shigella dysenteriae | 834 | 25 | 4560 | 3 | 18 |
| Klebsiella pneumoniae | 769 | 60 | 5317 | 7.8 | 14 |
| Erwinia amylovora | 435 | 19 | 3833 | 4.4 | 11 |
| Photorhabdus asymbiotica | 312 | 11 | 5064 | 3.5 | 6 |
| Pectobacterium carotovorum | 346 | 39 | 4886 | 11.3 | 7 |
| Yersinia pestis | 446 | 18 | 4658 | 4 | 10 |
| Pasteurellales | |||||
| Haemophilus haemolyticus | 111 | 6 | 1941 | 5.4 | 6 |
| Pasteurella canis | 332 | 11 | 2344 | 3.3 | 14 |
| Actinobacillus pleuropneumoniae | 506 | 15 | 2391 | 3 | 21 |
| Gallibacterium anatis | 350 | 6 | 2694 | 1.7 | 13 |
| Aggregatibacter actinomycetemcomitans | 506 | 15 | 2105 | 3 | 24 |
| Vibrionales | |||||
| Aliivibrio fischeri | 526 | 66 | 4343 | 12.5 | 12 |
| Photobacterium angustum | 409 | 77 | 4885 | 18.8 | 8 |
| Vibrio cholerae chr1 | 750 | 34 | 2961 | 4.5 | 25 |
| Vibrio cholerae chr2 | 452 | 14 | 1072 | 3.1 | 42 |
| Salinivibrio kushneri chr1 | 613 | 37 | 2840 | 6 | 22 |
| Salinivibrio kushneri Chr2 | 314 | 20 | 602 | 6.4 | 52 |
*
Ter size in kilobases. Ter is defined as the longest stretch of DNA containing matS flanked by two regions of 100 kilobases devoid of matS sites.
†
Number of matS sites identified in the Ter region using the MEME Suite and based on the matS consensus sequence (see Figure 3—figure supplement 1).
‡
matS density inside the Ter region calculated as the number of matS sites divided by the size of the Ter region.
§
Proportion of the Ter region compared to the entire chromosome, expressed as a percentage.