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. 2024 Jan 24;12:RP84628. doi: 10.7554/eLife.84628

Table 1. Summary of data resources providing access to datasets described in this manuscript.

All datasets described in this manuscript are freely accessible in the form of interactive web apps and downloadable R/Bioconductor objects.

Resource Data Format Link
Shiny (Chang et al., 2019) web app Visium SRT Interactive web app https://libd.shinyapps.io/locus-c_Visium/
iSEE (Rue-Albrecht et al., 2018) web app snRNA-seq Interactive web app https://libd.shinyapps.io/locus-c_snRNA-seq/
R/Bioconductor ExperimentHub data package Visium SRT and snRNA-seq Downloadable R/Bioconductor objects in SpatialExperiment (Righelli et al., 2022) and SingleCellExperiment (Amezquita et al., 2020) formats https://bioconductor.org/packages/WeberDivechaLCdata