| Biological sample (Plasmodium falciparum) |
Isolate #1 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #2 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #3 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #4 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #5 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #6 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #7 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #9 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #10 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #11 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #12 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #13 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #14 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #15 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #16 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #17 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #18 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #19 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #20 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #21 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #22 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #23 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #24 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #25 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #26 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #27 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #28 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #29 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #30 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a naïve, severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #31 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #32 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Biological sample (Plasmodium falciparum) |
Isolate #33 |
Patient isolate Wichers et al., 2021
|
|
Freshly isolated from a pre-exposed, non-severely ill malaria patient |
| Others |
Plasmodipur filter |
EuroProxima |
Transia Cat. #: 8011Filter25u |
Filter to remove residual granulocytes from erythrocyte pellet after Ficoll gradient centrifugation (see Materials and methods section ‘Blood sampling, processing, and in vitro cultivation of P. falciparum’) |
| Others |
TRIzol |
ThermoFisher |
Cat. #: 15596026 |
Commercial reagent |
| Commercial assay or kit |
RNeasy MinElute Cleanup Kit |
QIAGEN |
Cat. #: 74204 |
|
| Commercial assay or kit |
GLOBINclear kit |
ThermoFisher |
Cat. #: AM1980 |
|
| Commercial assay or kit |
NEBNextPoly(A) mRNA Magnetic Isolation Module |
NEB |
Cat. #: E7490L |
|
| Commercial assay or kit |
NEBNext Ultra RNA Library Prep Kit for Illumina |
NEB |
Cat. #: E7530L |
|
| Commercial assay or kit |
NEBNext Multiplex Oligos for Illumina (Index Primers Set 1) |
NEB |
Cat. #: E7335L |
|
| Commercial assay or kit |
KAPA HiFi plus dNTPs |
Roche |
Cat. #: 7958846001 |
|
| Software, algorithm |
SoapDeNovo-Trans |
SoapDeNovo-Trans |
RRID:SCR_013268
|
|
| Software, algorithm |
rnaSPAdes |
rnaSPAdes |
RRID:SCR_016992
|
|
| Software, algorithm |
Oases |
Oases |
RRID:SCR_011896
|
|
| Software, algorithm |
DESeq2 |
DESeq2 |
RRID:SCR_015687
|
|
| Software, algorithm |
Salmon |
Salmon |
RRID:SCR_017036
|
|
| Software, algorithm |
CAP3 |
CAP3 |
RRID:SCR_007250
|
|
| Software, algorithm |
SSPACE |
SSPACE |
RRID:SCR_005056
|
|
| Software, algorithm |
featureCounts |
featureCounts |
RRID:SCR_012919
|
|
