TABLE 3.
Benchmarking results for the classifier training stepa
| Database | Elapsed time | Classifier size (MB) | Memory usage peak (GB) | Memory usage mean (GB) |
|---|---|---|---|---|
| RDP | 0:01:23 | 20.85 | 4.46 | 2.6 |
| GSR | 0:02:28 | 25.61 | 6.3 | 4.06 |
| Greengenes | 0:02:51 | 28.14 | 3.52 | 2.43 |
| ITGDB | 0:06:38 | 44.92 | 14.88 | 8.79 |
| GTDB | 0:06:42 | 49.0 | 14.6 | 9.24 |
| Greengenes2 | 0:11:11 | 47.77 | 15.2 | 9.53 |
| SILVA | 0:40:07 | 106.55 | 23.54 | 16.75 |
| Metasquare | 1 day 21:27:39 | 589.99 | 175.92 | 125.98 |
a
A QIIME2 naive Bayes classifier was trained with each one of the reference databases using the default parameters.