TABLE 1.
Sample | Histology | BRAF/FGFR1 | Consensus clustering | SVM |
---|---|---|---|---|
VAL1 | GG | BRAF V600E | Group 1 | Group 1 |
VAL2 | GG | BRAF V600E | Group 1 | Group 1 |
VAL3 | GG | ‐ | Group 1 | Group 1 |
VAL4 | GG | ‐ | Group 1 | Group 1 |
VAL5 | GG | ‐ | Group 1 | Group 1 |
VAL6 | GG | ‐ | Group 1 | Group 1 |
VAL7 | GNT NOS | BRAF V600E | Group 1 | Group 1 |
VAL8 | GNT NOS | ‐ | Group 1 | Group 1 |
VAL34 | DNET | ‐ | Group 2 | Group 1* |
VAL16 | DNET | FGFR1‐TACC1 | Group 2 | Group 2 |
VAL17 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL18 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL19 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL20 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL21 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL22 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL23 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL24 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL25 | DNET | FGFR1 TKD | Group 2 | Group 2 |
VAL26 | DNET | ‐ | Group 2 | Group 2 |
VAL27 | DNET | ‐ | Group 2 | Group 2 |
VAL28 | GNT NOS | ‐ | Group 2 | Group 2 |
VAL29 | GNT NOS | ‐ | Group 2 | Group 2 |
VAL10 | GG | BRAF V600E | Control/Diffuse | Group 1 |
VAL11 | GG | BRAF V600E | Control/Diffuse | Group 1 |
VAL12 | GG | BRAF V600E | Control/Diffuse | Group 1 |
VAL13 | GG | BRAF V600E | Control/Diffuse | Group 1 |
VAL32 | GNT NOS | ‐ | Control/Diffuse | Group 1 |
VAL33 | GG | ‐ | Control/Diffuse | Group 1 |
VAL9 | GG | BRAF V600E | Control/Diffuse | Group 1 |
VAL15 | GG | BRAF V600E | Control/Diffuse | Group 2 |
VAL14 | GG | BRAF V600E | Control/Diffuse | Control |
VAL30 | DNET | FGFR1 TKD | Control/Diffuse | Control |
VAL31 | GG | ‐ | Control/Diffuse | Control |
Note: Twenty‐three tumours belonging to the validation cohort clustered alongside the training cohort by consensus clustering. The support vector model (SVM) predicted concordant classification in 22/23 (96%).
A single misclassification in a sample with >10% array probe failure.