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. Author manuscript; available in PMC: 2025 Feb 21.
Published in final edited form as: Cell Syst. 2024 Feb 8;15(2):166–179.e7. doi: 10.1016/j.cels.2024.01.005

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
anti-ALK (D5F3) Cell Signaling Technology Cat#3633
anti-R1α/β Cell Signaling Technology Cat#3927
anti-R1α Cell Signaling Technology Cat#5675
Alexa Fluor® 790 AffiniPure Donkey Anti-Rabbit IgG (H+L) Jackson Jackson ImmunoResearch Cat#711-655-152
IgG (H+L) Cross-Adsorbed Goat anti-Rabbit, DyLight 650 Invitrogen Cat# 84545
IgG (H+L) Cross-Adsorbed Goat anti-Rabbit, DyLight 488 Invitrogen Cat# 35553
Bacterial and virus strains
     
     
     
 
     
Biological samples
     
     
     
     
     
Chemicals, peptides, and recombinant proteins
purified GFP Abcam Cat#AB84191
crizotinib Sigma-Aldrich Cat#PZ0191
biliverdin hydrochloride Sigma-Aldrich Cat#30891
Hoechst 33342 Sigma-Aldrich Cat# 14533
     
Critical commercial assays
Lipofectamine 3000 Transfection Reagent ThermoFisher Scientific Cat# L3000001
Lipofectamine MessengerMAX ThermoFisher Scientific Cat# LMRNA001
     
 
     
Deposited data
     
     
     
 
     
Experimental models: Cell lines
Lenti X HEK 293T Takara Bio # 632180
H3122 Lab of Dr. Trever Bivona n/a
     
 
Experimental models: Organisms/strains
     
     
     
     
 
     
Oligonucleotides
R1α intron 2 sgRNA 1: ACCTGTATGCTAACTGTACT this paper N/A
R1α intron 2 sgRNA 2: GCAGCATTCAAGAAAAGCAA this paper N/A
R1α intron 2 sgRNA 3: CCTCACTTAAAGAGCTGAGG this paper N/A
R1α intron 2 sgRNA 4: GTGGGAGGTAATTTAATCAC this paper N/A
Recombinant DNA
pHR PGK LaG17-mCh-HOTag3 this paper N/A
pHR PGK LaG6-mCh-HOTag3 this paper N/A
pHR PGK LaG18-mC-HOTag3 this paper N/A
pHR PGK LaG17-mCh-HOTag6 this paper N/A
pHR PGK LaG17-mCh-FUS(LC) this paper N/A
pHR PGK LaG17-mCh-RGG this paper N/A
pHR PGK LaG17-mCh-Xvelo this paper N/A
pHR PGK LaG17-mCh this paper N/A
pHR PGK LaG17-mCh-HOTag3-NLS(c-MYC) this paper N/A
pHR PGK LaG17-miRFP670-HOTag6 this paper N/A
pCMV Cry2-EGFP
pCMV EGFP-sspB this paper N/A
pCMV EGFP-miRFP670 this paper N/A
pCMV miRFP670-iLid-iLid this paper N/A
pCMV miRFP670-iLid-iLid-iLid this paper N/A
pCMV miRFP670-iLid-iLid-iLid-iLid this paper N/A
pCMV miRFP670-iLid-iLid-iLid-iLid-iLid this paper N/A
pCMV miRFP670-iLid-iLid-iLid-iLid-iLid-iLid this paper N/A
pCMV EGFP-TDP43 this paper N/A
pCMV SARS-CoV-2 Nucleocapsid-EGFP this paper N/A
pCMV EML4-ALK-EGFP this paper N/A
pCMV iLid-FTH1–2A-EGFP-sspB this paper N/A
pCMV ALFA-Cry2–2A-BFP this paper N/A
pCMV LaG17-mRuby2-HOTag3 this paper N/A
pCS DEST Gab1(263–451)-mCh-HOTag3 this paper N/A
pCS DEST Gab1(263–451)-mCh this paper N/A
pCMV BcLOV-EGFP
pCMV nbALFA-EGFP-HOTag3 this paper N/A
pCMV iRFP-ALFA-ALFA-ALFA-ALFA this paper N/A
pCMV EGFP
pCMV EGFP-EGFP this paper N/A
pCMV EGFP-EGFP-EGFP this paper N/A
pCMV EGFP-EGFP-EGFP-EGFP-EGFP this paper N/A
pCMV FUS(LC)-GFP this paper N/A
pCMV RGG-GFP this paper N/A
Software and algorithms
MATLAB MathWorks https://www.mathworks.com/products/matlab.html
Python Van Rossum et al 87 https://www.python.org/
     
     
     
Other