KEY RESOURCES TABLE
| Resource Type | Specific Reagent or Resource | Source or Reference | Identifiers | Additional Information |
|---|---|---|---|---|
| Add additional rows as needed for each resource type | Include species and sex when applicable. | Include name of manufacturer, company, repository, individual, or research lab. Include PMID or DOI for references; use “this paper” if new. | Include catalog numbers, stock numbers, database IDs or accession numbers, and/or RRIDs. RRIDs are highly encouraged; search for RRIDs at https://scicrunch.org/resources. | Include any additional information or notes if necessary. |
| Biological Sample | patients with schizophrenia and control group | This paper | ||
| Cell Line | 255 Cultured Neural progenitor cells derived from Olfactory Neuroepithelium | This paper | primary | |
| Chemical Compound or Drug | Matrigel basement membrane | BD Bioscience | cat. 354234 | |
| Chemical Compound or Drug | Coon’s medium | Sigma | cat. F6636–10L | |
| Chemical Compound or Drug | Dispase | BD Bioscience | cat. 354235 | |
| Chemical Compound or Drug | Leibovitz’s L-15 Medium (1X), liquid | Invitrogen | 11415–064 | |
| Chemical Compound or Drug | Bovine Pituitary Extract | Gibco | 13028–014 | |
| Chemical Compound or Drug | antibiotic–antimycotic | Gibco | 15240–096 | |
| Chemical Compound or Drug | Human transferrin | Gibco | 0030124SA | |
| Chemical Compound or Drug | Sodium Selenite | Sigma | S9133–1MG | |
| Chemical Compound or Drug | Nutrient Mixture F-12 Ham, Coon's Modification | Sigma | F6636–10L | |
| Chemical Compound or Drug | hydrocortisone | Sigma | H0135 | |
| Chemical Compound or Drug | Thyroxine | Sigma | T0397 | |
| Chemical Compound or Drug | antibiotic–antimycotic | Gibco | 15240–096 | |
| Chemical Compound or Drug | Endothelial Cell Growth Supplement | Millipore | 02–102 | |
| Chemical Compound or Drug | Fetal Bovine Serum USDA | KSE Scientific | N/A | |
| Commercial Assay Or Kit | TruSeq Stranded Total RNA LT Library preparation kits with Ribo-Zero Gold | Illumina, Inc. | cat. RS-122–2301 and RS-122–2302 | |
| Commercial Assay Or Kit | Direct-Zol RNA MiniPrep kit | Zymo Research | R2051 | |
| Commercial Assay Or Kit | KAPA Library Quantification Kit | Kapa Biosystems | KK4824 | |
| Deposited Data; Public Database | BrainSpan database | www.brainspan.org | DOI: 10.1126/science.aat7615 | |
| Deposited Data; Public Database | https://www.gencodegenes.org/human/release_22.html | v22 | ||
| Genetic Reagent | ||||
| Organism/Strain | ||||
| Recombinant DNA | ||||
| Sequence-Based Reagent | ||||
| Software; Algorithm | HTSeq Python package | https://doi.org/10.1093/bioinformatics/btp120; https://doi.org/10.1093/bioinformatics/btu638 | RRID:SCR_005514 | |
| Software; Algorithm | DESeq2 | http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html | v1.16.1 | doi: 10.1186/s13059-014-0550-8 |
| Software; Algorithm | GT-FAR | https://genomics.isi.edu/gtfar | v12 | |
| Software; Algorithm | SVA (R package) | available at: http://www.bioconductor.org | v3.24.4 | doi: 10.1093/bioinformatics/bts034 |
| Software; Algorithm | WGCNA (R package) | available at: http://www.bioconductor.org | https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/#cranInstall |