Table 2.

Summary of the whole-genome sequences of six individuals used in this study.

Individual	Number of total reads	Total reads (Gb)	Number of cleaned reads	Number of reads mapped to Bartlett DH Genome v2.0	Total mapped reads (Gb)	Q20 (%)	Q30 (%)	GC (%)	Average depth of coverage
415-1	168,467,380	25.3	166,570,886	164,086,057	24.6	96.9	91.6	37.9	49.5
515-20	161,263,742	24.2	159,163,368	157,009,244	23.6	96.7	91.3	37.7	47.4
Kosui	153,114,240	23.0	151,114,928	149,043,972	22.4	96.6	91.0	37.9	45.0
Seedling047	140,565,228	21.1	138,943,604	137,133,459	20.6	97.0	91.8	37.6	41.4
Seedling053	139,843,208	21.0	137,754,770	134,899,112	20.2	96.5	90.8	37.8	40.7
Seedling075	149,713,056	22.5	147,683,034	145,748,688	21.9	96.8	91.4	37.5	44.0