Table 2.
Sequences of cox1 gene used for haplotype and phylogenetic analyses
| Haplotype | NCBI | Position | Species | Author | Host | Origin |
|---|---|---|---|---|---|---|
| BrM1 | NC_004298.1 | 2254–3900 | Brugia malayi | Ghedin et al. (2007) | Human | Not specified |
| BrM1 | AF538716.1 | 2254–3900 | Brugia malayi | Ghedin et al. (2007) | Human | Not specified |
| BrP1 | AP017680.1 | 7–1653 | Brugia pahangi | Kikuchi et al. (2019) | Not specified | Not specified |
| BrT1 | AP017686.1 | 11952–13598 | Brugia timori | Kikuchi et al. (2019) | Not specified | Not specified |
| DiH1 | KX265050.1 | 2265–3911 | Dirofilaria sp. ‘hongkongensis’ | Yilmaz et al. (2016) | Human | India |
| DiH1 | NC_031365.1 | 2265–3911 | Dirofilaria sp. ‘hongkongensis’ | Yilmaz et al. (2016) | Human | India |
| DiI1 | AJ537512.1 | 2268–3914 | Dirofilaria immitis | Hu et al. (2003) | Dog | Australia |
| DiI1 | NC_005305.1 | 2268–3914 | Dirofilaria immitis | Hu et al. (2003) | Dog | Australia |
| DiR1 | NC_029975.1 | 2262–3908 | Dirofilaria repens | Lorenzen et al. (2016) | Not specified | Not specified |
| DiR2 | KX265049.1 | 2262–3908 | Dirofilaria repens | Yilmaz et al. (2016) | Human | Croatia |
| DiR3 | KX265048.1 | 2262–3908 | Dirofilaria repens | Yilmaz et al. (2016) | Human | Italy |
| DiR4 | KX265047.1 | 2262–3908 | Dirofilaria repens | Yilmaz et al. (2016) | Human | Italy |
| LoL1 | NC_016199.1 | 2244–3890 | Loa loa | McNulty et al. (2012) | Human | Cameroon |
| LoL2 | HQ186250.1 | 2244–3890 | Loa loa | McNulty et al. (2012) | Human | Cameroon |
| OnF1 | AP017692.1 | 5454–7100 | Onchocerca flexuosa | Kikuchi et al. (2019) | Not specified | Not specified |
| OnF2 | HQ214004.1 | 2264–3910 | Onchocerca flexuosa | McNulty et al. (2012) | Red deer | Germany |
| OnO1 | KX181289.2 | 1–1647 | Onchocerca ochengi | Jaleta et al. (2018) | Cattle | Cameroon |
| OnO1 | AP017693.1 | 5484–7130 | Onchocerca ochengi | Kikuchi et al. (2019) | Not specified | Not specified |
| OnO2 | AP017694.1 | 5484–7130 | Onchocerca ochengi | Kikuchi et al. (2019) | Not specified | Not specified |
| OnO3 | KX181290.2 | 1–1647 | Onchocerca ochengi | Jaleta et al. (2018) | Cattle | Cameroon |
| OnV1 | AF015193.1 | 2266–3912 | Onchocerca volvulus | Keddie et al. (1998) | Human | Sub-Saharan Africa |
| OnV1 | NC_001861.1 | 2266–3912 | Onchocerca volvulus | Keddie et al. (1998) | Not specified | Not specified |
| OnV2 | AP017695.1 | 2278–3924 | Onchocerca volvulus | Kikuchi et al. (2019) | Not specified | Not specified |
| OnV3 | KT599912.1 | 2266–3912 | Onchocerca volvulus | Crainey et al. (2016) | Human | Brazilia |
| SeC1 | See Table 1 | 1–1647 | Setaria cervi | Current result | Moose | Czech Republic |
| SeC1 | See Table 1 | 1–1647 | Setaria cervi | Current result | Red deer | Czech Republic |
| SeC1 | See Table 1 | 1–1647 | Setaria cervi | Current result | Sika deer | Czech Republic |
| SeD1 | GU138699.1 | 2258–3904 | Setaria digitata | Yatawara et al. (2010) | Cattle × buffalo | Sri Lanka |
| SeD2 | KY284626.1 | 7–1653 | Setaria digitata | Liu et al. (2017) | Buffalo | China |
| SeL1 | NC_044071.1 | 2262–3908 | Setaria labiatopapillosa | Gao et al. (2019) | Sheep | China |
| ThC1 | NC_018363.1 | 1–1647 | Thelazia callipaeda | Liu et al. (2013) | Dog | China |
| ThC2 | KY908320.1 | 1–1647 | Thelazia callipaeda | Zhang et al. (2017) | Not specified | China |
| ThC3 | KY908318.1 | 1–1647 | Thelazia callipaeda | Zhang et al. (2017) | Not specified | China |
| ThC4 | AP017700.1 | 9432–11078 | Thelazia callipaeda | Kikuchi et al. (2019) | Not specified | Not specified |
| ThC5 | KY908319.1 | 1–1647 | Thelazia callipaeda | Zhang et al. (2017) | Not specified | China |
| WuB1 | NC_016186.1 | 2252–3898 | Wuchereria bancrofti | McNulty et al. (2012) | Human | Papua New Guinea |
| WuB1 | JN367461.1 | 2252–3898 | Wuchereria bancrofti | Ramesh et al. (2012) | Human | Mali |
| WuB1 | HQ184469.1 | 2252–3898 | Wuchereria bancrofti | McNulty et al. (2012) | Human | Papua New Guinea |
| WuB2 | AP017705.1 | 2277–3923 | Wuchereria bancrofti | Kikuchi et al. (2019) | Not specified | Not specified |
| WuB3 | JF775522.1 | 2250–3896 | Wuchereria bancrofti | Ramesh et al. (2012) | Human | Papua New Guinea |