Table 3.

ΔbvgR in non-modulating (Bvg+) conditions.

Cluster	ΔbvgR vs. WT Non-Mod	WT Non_Mod vs. Mod	ΔbvgR Non-mod vs. Mod	Description	Gene
a	Up	Down	Down	Vrgs repressed by BvgR in non-modulating (Bvg+) conditions and do not require BvgR for modulation	flaA (flagellar protein)
b	Up	Down	NS	Vrgs repressed by BvgR in non-modulating (Bvg+) conditions and require BvgR for modulation.	wcbA (capsular polysaccharide)
c	Down	Up	Up	Vags that require BvgR for full expression in non-modulating (Bvg+) conditions	PRN
d	NS	Down	Down	Vrgs not regulated by BvgR in non-modulating (Bvg+) conditions	ureE (urease)
e	NS	Up	Up	Vags not regulated by BvgR in non-modulating (Bvg+) conditions	FHA

Transcriptional response of genes within clusters identified from comparisons used to evaluate the differential expression of the ΔbvgR mutant in non-modulating (Bvg+) conditions. Yellow, indicates genes upregulated (Up) (log2fc > 1); blue, indicates genes downregulated (Down) (log2fc < −1); white, no significant change or NS in gene expression (log2fc < 1, but > −1).