Table 4. Comparison of the Polar (Hydrogen Bonds) and Nonpolar Interactions (Hydrophobic, van der Waals Contacts) of Blumeatin and Quercetin (Natural Ligand) with the Residues from the Active Site of XO.
| ligand | conventional hydrogen bonds, bond lengths (in Å in parentheses), and typesa | residues in van der Waals contact or hydrophobic interaction |
|---|---|---|
| blumeatin | via O atom of Thr1010: 2.70:C=O and 3.26:O–H; via N atom of Thr1010: 2.93:C=O and 2.97:O–H; Val1011 (3.08:C=O); Arg880 (2.03:O–H); Phe914 (3.48:π–π and 4.04:(O–H) π–σ); Phe1009 (π–π); Ala1078 (3.58:O–H and 5.22:π–alkyl); Ala1079 (3.96:π–σ); Leu1014 (3.47:π–σ); Leu873 (4.74:π–alkyl), Leu648 (5.05:π–alkyl), Ala910 (4.37:π–alkyl) | Glu802, Asn768, Ser1008, Glu1261, Phe1013, Phe1150, Ser876, Lys771, Thr803 |
| quercetin | Arg880, Thr1010, Glu802, Phe914, Ala1079, Phe1009, Leu873, Leu1014, Leu648, Val1011 | Ser1008, Phe1150, Ser876, Phe1013, Lys771, Pro1076, Ala1078 |
Bold text denotes mutual residues that are in interaction with both blumeatin and quercetin.