Table 3.

Mean prediction correlation ± standard deviation observed for each trait across all annotation datasets using ~30,000 markers for modeling.

Trait	Non-synonymous SNPs (29,553)	Synonymous SNPs (31,229)	Non-coding SNPs (32,388)	Combination (46,585)
Chipping quality	0.527 ± 0.010 (1.027)	0.519 ± 0.010 (1.024)	0.544 ± 0.011 (1.052)	0.536 ± 0.011 (1.046)
Length/width ratio	0.482 ± 0.010 (1.012)	0.495 ± 0.005 (1.025)	0.493 ± 0.009 (1.042)	0.489 ± 0.010 (1.022)
Senescence	0.347 ± 0.012 (1.011)	0.346 ± 0.015 (1.006)	0.315 ± 0.008 (0.967)	0.339 ± 0.008 (0.997)
Dry matter content	0.735 ± 0.004 (1.016)	0.743 ± 0.002 (1.023)	0.746 ± 0.003 (1.028)	0.744 ± 0.003 (1.029)
Yield	0.280 ± 0.014 (0.970)	0.242 ± 0.011 (0.901)	0.239 ± 0.010 (0.885)	0.253 ± 0.013 (0.920)

Highest obtained correlation for each trait in bold. Bias in brackets.