Skip to main content
. 2024 Feb 24;27(4):109288. doi: 10.1016/j.isci.2024.109288
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit anti-LARP4A Abcam ab241489; RRID: AB_3094705
Rabbit anti-LARP4A Merck HPA039306; RRID: AB_3094712
Rabbit anti-LARP4B Abcam ab197085; RRID: AB_3094706
Rabbit anti-LARP4B Merck HPA036566; RRID: AB_10673624
Rabbit anti-GAPDH Cell Signalling Technology 5174; RRID: AB_10622025
Rabbit α-tubulin Cell Signalling Technology 2144; RRID: AB_2210548
Mouse anti-E-cadherin Abcam ab76055; RRID: AB_1310159
Rabbit anti-Vimentin Cell Signalling Technology 5741; RRID: AB_10695459
Mouse anti-TOM20 Santa Cruz Biotechnology sc17764; RRID: AB_628381
Mouse Lamin A/C Santa Cruz Biotechnology sc7292; RRID: AB_627875
Rabbit anti-E2F1 Cell Signalling Technology 3742; RRID: AB_2096936
Rabbit anti-Aurora B Abcam ab2254; RRID: AB_302923
Rabbit anti-Cyclin B1 Cell Signalling Technology 4138; RRID: AB_2072132
Rabbit anti-Cyclin E2 Cell Signalling Technology 4132; RRID: AB_2071197
Goat anti-rabbit HRP-conjugated IgG Jackson Immunoresearch 111-035-003; RRID: AB_2313567
Horse anti-mouse HRP-conjugated IgG Cell Signalling Technology 7076; RRID: AB_330924
Rabbit anti-Ki67 Abcam ab15580; RRID: AB_443209
Chicken anti-GFP Abcam ab13970; RRID: AB_300798
Rabbit anti-Cleaved Caspase 3 Cell Signalling Technology 9661; RRID: AB_2341188
Rabbit anti-pHH3 Cell Signalling Technology 9701; RRID: AB_331535
Goat anti-Rabbit AlexaFluor 488 Invitrogen A11034; RRID: AB_2576217
Goat anti-Rabbit AlexaFluor 546 Invitrogen A11035; RRID: AB_2534093
Goat anti-Chick AlexaFluor 647 Abcam ab150171; RRID: AB_2921318
Goat anti-mouse AlexaFluor 647 Invitrogen A21236; RRID: AB_2535805

Bacterial and virus strains

XL-10 Gold Ultracompetent cells Agilent 200314

Biological samples

Prostate cancer tissue array Insight Bio PR481
Bone and cartilage tumour tissue array Insight Bio OS804d
Normal bone tissue array Insight Bio BO244g

Chemicals, peptides, and recombinant proteins

Lipofectamine 2000 Invitrogen 11668027
Lipofectamine RNAiMAX Invitrogen 13778100
OptiMEM serum-free medium Gibco 31985062
mmLVRT reverse transcriptase Promega M1701
Brilliant II SYBR Green QPCR Master Mix Agilent 600828
Laemmli buffer Bio-Rad 1610747
2-mercaptoethanol Merck M3701
Clarity ECL substrates Bio-Rad 1705060
Fluoroshield with DAPI Abcam Ab104139
DAB subtrate kit VectorLabs SK-4100
ProLong Gold Antifade Mountant Invitrogen P36930
Phalloidin-TRITC Merck P1951
Annexin V AlexaFluore 350 conjugate Invitrogen A23202
Propridium Iodide Invitrogen P3566
Matrigel Corning 354277
Xenolight D-luciferin substrate PerkinElmer 122799
CellTrackerTM Green CMFDA Dye Invitrogen C2925

Critical commercial assays

RNeasy Mini kit Qiagen 74004
Bicinchoninic acid standard curve assay Pierce 23225
Standard cell fractionation kit Abcam ab109719
AlexaFluor 647 Click-iT EdU Proliferation kit Invitrogen C10340
CellTitre 96 AQueous One Solution MTS Promega G3582

Deposited data

Raw bulk RNAseq data This paper GEO: GSE222467

Experimental models: Cell lines

Human: MG63 osteosarcoma ATCC CRL-1427
Human: PC3 prostate cancer Dr. Magali Williamson, King’s College London CRL-1435
Human: MNNG/HOS osteosarcoma +GFP/Luc reporter From Tattersall et al.51 N/A

Experimental models: Organisms/strains

Mouse: CB17/lcr-Prkdcscid/lcrlcoCrl Charles River Laboratories N/A
Mouse: Balb/c Nude Charles River Laboratories N/A

Oligonucleotides

ON-TARGETplus Non-targeting siRNA #2 Horizon Discovery D-001810-02
siGENOME Human LARP4 siRNA Horizon Discovery D-016523-02
siGENOME Human LARP4 siRNA Horizon Discovery D-016523-04
siGENOME Human LARP4B siRNA Horizon Discovery D-026388-01
siGENOME Human LARP4B siRNA Horizon Discovery D-026388-04

Recombinant DNA

pCB6-GFP plasmid Laboratory of Anne Ridley N/A
pCB6-GFP-LARP4A This paper N/A
pCB6-GFP-LARP4B This paper N/A
pCMV2-FLAG-LARP4A From Yang et al.24 N/A

Software and algorithms

ImageLab Bio-Rad N/A
QuPath From Bankhead et al.79 N/A
ImageJ National Institute of Health N/A
JACoP From Bolte et al.80 and Schneider et al.81 N/A
Harmony with PhenoLOGIC PerkinElmer N/A
MetaMorph Molecular Devices N/A
Chemotaxis and Migration tool Ibidi N/A
SkyScan NRecon software v.1.6.9 Bruker N/A
FastQC From Andrews82 N/A
HISAT2 From Kim et al.83 N/A
featureCounts From Liao et al.84 N/A
EdgeR From Liu et al.85 and Robinson et al.86 N/A
Enrichr From Chen et al.87 N/A
Prism GraphPad N/A

Other

NuPAGE 4-12% Bis-Tris gels Invitrogen NP0321BOX
MES running buffer Invitrogen NP000202
8μm pore Transwell chambers Thermo Scientific 140656