Antibodies |
|
Rabbit anti-LARP4A |
Abcam |
ab241489; RRID: AB_3094705
|
Rabbit anti-LARP4A |
Merck |
HPA039306; RRID: AB_3094712
|
Rabbit anti-LARP4B |
Abcam |
ab197085; RRID: AB_3094706
|
Rabbit anti-LARP4B |
Merck |
HPA036566; RRID: AB_10673624
|
Rabbit anti-GAPDH |
Cell Signalling Technology |
5174; RRID: AB_10622025
|
Rabbit α-tubulin |
Cell Signalling Technology |
2144; RRID: AB_2210548
|
Mouse anti-E-cadherin |
Abcam |
ab76055; RRID: AB_1310159
|
Rabbit anti-Vimentin |
Cell Signalling Technology |
5741; RRID: AB_10695459
|
Mouse anti-TOM20 |
Santa Cruz Biotechnology |
sc17764; RRID: AB_628381
|
Mouse Lamin A/C |
Santa Cruz Biotechnology |
sc7292; RRID: AB_627875
|
Rabbit anti-E2F1 |
Cell Signalling Technology |
3742; RRID: AB_2096936
|
Rabbit anti-Aurora B |
Abcam |
ab2254; RRID: AB_302923
|
Rabbit anti-Cyclin B1 |
Cell Signalling Technology |
4138; RRID: AB_2072132
|
Rabbit anti-Cyclin E2 |
Cell Signalling Technology |
4132; RRID: AB_2071197
|
Goat anti-rabbit HRP-conjugated IgG |
Jackson Immunoresearch |
111-035-003; RRID: AB_2313567
|
Horse anti-mouse HRP-conjugated IgG |
Cell Signalling Technology |
7076; RRID: AB_330924
|
Rabbit anti-Ki67 |
Abcam |
ab15580; RRID: AB_443209
|
Chicken anti-GFP |
Abcam |
ab13970; RRID: AB_300798
|
Rabbit anti-Cleaved Caspase 3 |
Cell Signalling Technology |
9661; RRID: AB_2341188
|
Rabbit anti-pHH3 |
Cell Signalling Technology |
9701; RRID: AB_331535
|
Goat anti-Rabbit AlexaFluor 488 |
Invitrogen |
A11034; RRID: AB_2576217
|
Goat anti-Rabbit AlexaFluor 546 |
Invitrogen |
A11035; RRID: AB_2534093
|
Goat anti-Chick AlexaFluor 647 |
Abcam |
ab150171; RRID: AB_2921318
|
Goat anti-mouse AlexaFluor 647 |
Invitrogen |
A21236; RRID: AB_2535805
|
|
Bacterial and virus strains |
|
XL-10 Gold Ultracompetent cells |
Agilent |
200314 |
|
Biological samples |
|
Prostate cancer tissue array |
Insight Bio |
PR481 |
Bone and cartilage tumour tissue array |
Insight Bio |
OS804d |
Normal bone tissue array |
Insight Bio |
BO244g |
|
Chemicals, peptides, and recombinant proteins |
|
Lipofectamine 2000 |
Invitrogen |
11668027 |
Lipofectamine RNAiMAX |
Invitrogen |
13778100 |
OptiMEM serum-free medium |
Gibco |
31985062 |
mmLVRT reverse transcriptase |
Promega |
M1701 |
Brilliant II SYBR Green QPCR Master Mix |
Agilent |
600828 |
Laemmli buffer |
Bio-Rad |
1610747 |
2-mercaptoethanol |
Merck |
M3701 |
Clarity ECL substrates |
Bio-Rad |
1705060 |
Fluoroshield with DAPI |
Abcam |
Ab104139 |
DAB subtrate kit |
VectorLabs |
SK-4100 |
ProLong Gold Antifade Mountant |
Invitrogen |
P36930 |
Phalloidin-TRITC |
Merck |
P1951 |
Annexin V AlexaFluore 350 conjugate |
Invitrogen |
A23202 |
Propridium Iodide |
Invitrogen |
P3566 |
Matrigel |
Corning |
354277 |
Xenolight D-luciferin substrate |
PerkinElmer |
122799 |
CellTrackerTM Green CMFDA Dye |
Invitrogen |
C2925 |
|
Critical commercial assays |
|
RNeasy Mini kit |
Qiagen |
74004 |
Bicinchoninic acid standard curve assay |
Pierce |
23225 |
Standard cell fractionation kit |
Abcam |
ab109719 |
AlexaFluor 647 Click-iT EdU Proliferation kit |
Invitrogen |
C10340 |
CellTitre 96 AQueous One Solution MTS |
Promega |
G3582 |
|
Deposited data |
|
Raw bulk RNAseq data |
This paper |
GEO: GSE222467
|
|
Experimental models: Cell lines |
|
Human: MG63 osteosarcoma |
ATCC |
CRL-1427 |
Human: PC3 prostate cancer |
Dr. Magali Williamson, King’s College London |
CRL-1435 |
Human: MNNG/HOS osteosarcoma +GFP/Luc reporter |
From Tattersall et al.51
|
N/A |
|
Experimental models: Organisms/strains |
|
Mouse: CB17/lcr-Prkdcscid/lcrlcoCrl
|
Charles River Laboratories |
N/A |
Mouse: Balb/c Nude
|
Charles River Laboratories |
N/A |
|
Oligonucleotides |
|
ON-TARGETplus Non-targeting siRNA #2 |
Horizon Discovery |
D-001810-02 |
siGENOME Human LARP4 siRNA |
Horizon Discovery |
D-016523-02 |
siGENOME Human LARP4 siRNA |
Horizon Discovery |
D-016523-04 |
siGENOME Human LARP4B siRNA |
Horizon Discovery |
D-026388-01 |
siGENOME Human LARP4B siRNA |
Horizon Discovery |
D-026388-04 |
|
Recombinant DNA |
|
pCB6-GFP plasmid |
Laboratory of Anne Ridley |
N/A |
pCB6-GFP-LARP4A |
This paper |
N/A |
pCB6-GFP-LARP4B |
This paper |
N/A |
pCMV2-FLAG-LARP4A |
From Yang et al.24
|
N/A |
|
Software and algorithms |
|
ImageLab |
Bio-Rad |
N/A |
QuPath |
From Bankhead et al.79
|
N/A |
ImageJ |
National Institute of Health |
N/A |
JACoP |
From Bolte et al.80 and Schneider et al.81
|
N/A |
Harmony with PhenoLOGIC |
PerkinElmer |
N/A |
MetaMorph |
Molecular Devices |
N/A |
Chemotaxis and Migration tool |
Ibidi |
N/A |
SkyScan NRecon software v.1.6.9 |
Bruker |
N/A |
FastQC |
From Andrews82
|
N/A |
HISAT2 |
From Kim et al.83
|
N/A |
featureCounts |
From Liao et al.84
|
N/A |
EdgeR |
From Liu et al.85 and Robinson et al.86
|
N/A |
Enrichr |
From Chen et al.87
|
N/A |
Prism |
GraphPad |
N/A |
|
Other |
|
NuPAGE 4-12% Bis-Tris gels |
Invitrogen |
NP0321BOX |
MES running buffer |
Invitrogen |
NP000202 |
8μm pore Transwell chambers |
Thermo Scientific |
140656 |