Table 2.
Summary of the Detected Monkeypox virus Variants
| Locus | Allelea | Case-Patient Genotypeb | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ref | Alt | 1 | 1b | 2 | 3 | 4 | 5 | 6 | 7 | 7b | 8 | 9 | 10 | 10b | 11 | 12 | |
| 20173 | A | G | . | . | / | . | . | / | . | . | . | . | G | . | . | . | . |
| 45798 | G | A | . | . | / | . | A | / | . | . | . | . | . | . | . | / | / |
| 63125 | A | T | . | . | / | . | . | / | . | T | T | . | . | . | . | . | . |
| 130095 | C | T | . | . | / | . | . | . | T | . | . | . | . | . | . | . | . |
| 149410 | G | A | . | . | / | A | . | . | . | . | . | . | . | . | . | . | . |
| 149823 | C | T | . | . | / | . | T | / | . | . | . | . | . | . | . | . | / |
| 155757 | C | T | . | . | T | . | . | / | . | . | . | . | . | . | . | . | T |
| 167669 | C | T | . | . | / | . | . | / | . | T | T | . | . | . | . | . | . |
| 186144 | G | A | . | . | / | A | A | / | . | A | A | / | / | . | . | A | / |
| 188370 | C | T | . | . | / | T | T | / | . | T | T | T | / | . | . | T | / |
Genomic coordinates are shown relative to the human MPXV1 B.1 reference strain (clade B1; ON563414.1). Genomic coordinates relative to the reference strain used by Nextstrain (clade IIb; NC_063383.1) are shown in Supplementary Table 3.
Abbreviation: MPXV, Monkeypox virus.
aThe B.1 reference nucleotide and alternate nucleotide for each locus are shown.
bLoci that match the reference genome are indicated with a dot. Loci that could not be genotyped are indicated with “/”.