Table 2.
List of the annotated genes in the chloroplast genomes of Cornus subg. Syncarpea.
| Category | Groups of gene | Name of genes |
|---|---|---|
| Self-replication | Ribosomal RNA Transfer RNA |
rrn4.5, rrn5, rrn16, rrn23
trnA-UGCa,c, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCCa,trnH-GUG c , trnI-CAUc, trnI-GAUa,c, trnK-UUU a , trnL-CAAc, trnL-UAA a , trnL-UAG, trnM-CAU, trnN-GUUc, trnP-UGG, trnQ-UUG, trnR-UCU, trnR-ACG c , trnS-UGA, trnS-GCU, trnS-GGA, trnT-GGU, trnT-UGU, trnV-UAC a , trnV-GACc, trnW-CCA,trnY-GUA |
| Small subunit of ribosome |
rps2, rps3, rps4, rps7
c
, rps8, rps11, rps12a,c, rps14, rps15 c , rps16 a , rps18, rps19 c |
|
| Photosystem I | Large sub unit of ribosome |
rpl2a,c, rpl14, rpl16
a
, rpl20, rpl22, rpl23 c , rpl32, rpl33, rpl36 |
| RNA polymerase subunits |
rpoA, rpoB, rpoC1, rpoC2 Photosynthesis
psaA, psaB, psaC, psaI, psaJ, cf1, ycf2, ycf3b, ycf4 |
|
| Photosystem II |
psbA, psbB, psbC, psbD, psbE, psbH, psbI, psbJ, psbK, psbL, psbM, psbF, psbN, psbT, psbZ |
|
| Sub units of cytochrome ATP synthase NADH-dehydrogenase |
petA, petB
a
, petD
a
, petG, petL, petN
atpA, atpB, atpE, atpF a , atpH, atpI ndhA a , ndhBa,c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
|
| Othergenes | Rubiscolargesubunit Translational initiation factor Maturase K Envelope membrane protein Proteolysis Cytochrome c biogenesis acetyl-CoAcarboxylase beta subunit |
rbcL infA matK cemA clpP clpP ccsA accD |
a
Genes with one intron.
b
Genes with two introns.
c
Two genes copied in IR regions.