Table 2.
Powdery mildew-associated regions detected in subsets of the LandracePLUS panel
| Chr | Position | Subset | Isolate | beta | Pm genes described on specific chromosome arm/chromosome |
|---|---|---|---|---|---|
| 1AL | 539,831,968–551,902,568 | Turkey (221) | CHE_98230 | −0.14 | Pm25(1) |
| 1BL | 453,908,676–462,314,398 | Turkey (223, 222, 222, 217, 212) |
CHE_94202 CHE_96224 CHE_97266 CHN_46_30 ISR_106 |
−0.22 −0.24 −0.26 −0.28 −0.26 |
Pm28(2), Pm39(3) |
| 1BL | 664,434,720–669,204,920 | Turkey (222) | CHE_96224 | −0.22 | Pm28(2), Pm39(3) |
| 1DL | 333,346,020–339,401,620 | Turkey (217, 212) |
CHN_46_30 ISR_106 |
−0.48 −0.48 |
Pm10(4) |
| 2AL | 534,734,122–546,804,722 | Turkey (221) | CHE_98230 | 0.38 | Pm4(5), Pm50(6), Pm65(7), pmX(8), PmHo(9), Ml92145E8-9(10), PmHNK54(11), PmLK906(12), PmYm66(13), PmSN15218(14) |
| 2AL | 762,574,656–774,645,256 | Turkey (221) | CHE_98230 | 0.84 | Pm4(5), Pm50(6), Pm65(7), pmX(8), PmHo(9), Ml92145E8-9(10), PmHNK54(11), PmLK906(12), PmYm66(13), PmSN15218(14) |
| 2BL | 737,551,805–742,322,005 | Pakistan/Iran (167) | CHE_98230 | −0.33 | Pm6(15), Pm33(16), Pm51(17), Pm52(18), Pm57(19), Pm62 (20), Pm63(21), Pm64(22), PmKN0816(23), PmLS5082(24), PmQ(25), PmY39(26), pmYN99102(27), MlAB10(28), Mlzec1(29), PMCG15-009(30) |
| 3AL | 643,922,092–655,992,692 | Turkey (220) | GBR_JIW2 | −0.16 | – |
| 4BL | 610,988,411–615,758,611 | Turkey (224) | CHE_97223 | −0.12 | Pm7(31), Mld(32), PmTx45(33) |
| 5AL | 472,287,696–484,857,509 | Turkey (217) | CHN_46_30 | 0.16 | pm2026(34) |
| 5AL | 679,959,567–692,030,167 | Pakistan/Iran (167) | CHE_98230 | 0.28 | pm2026(34) |
| 5BL | 375,685,467–380,455,667 | Turkey (223) | CHE_94202 | −0.20 | Pm36(35), Pm53(36), PmAS846(37), Ml3D232(38) |
| 5BL | 517,686,966–522,457,166 | Pakistan/Iran (167) | CHE_98230 | 0.19 | Pm36(35), Pm53(36), PmAS846(37), Ml3D232(38) |
| 5BL | 656,831,925–661,602,125 | Turkey (217) | CHN_46_30 | 0.19 | Pm36(35), Pm53(36), PmAS846(37), Ml3D232(38) |
| 5DS | 26,487,899–32,543,499 | Pakistan/Iran (167) | CHE_98230 | 0.27 | Pm2(39), Pm46 (40), Pm55(41) |
| 6AS | 0–7,996,136 | Turkey (224) | CHE_97223 | −0.12 | Pm21(42, 43), Pm56(44) |
| 6AS | 41,508,045–53,578,645 | Pakistan/Iran (167) | CHE_98230 | −0.25 | Pm21(42, 43), Pm56(44) |
| 7AL | 611,542,221–623,612,821 | Turkey (224) | CHE_97223 | −0.09 | Pm1(45), Pm9 (46), Pm37(47), Pm59(48), Pm60(49), PmG16(50), MlIw72(51), Mlm2033(52), Mlm80(52), mlRd30(53), MlUM15(54), PmU(55), PmTb7A.1(56), PmTb7A.2(56), MlIW172(57), MlWE18(58) |
| 7BL | 701,729,427–706,653,524 | Turkey (221) | CHE_98230 | −0.16 | Pm5(59), pmDHT(60), PmSGD(61), PmTm4(62), pmHYM(63), pmYBL(64), mlxbd(65), mljy(66), mlsy(66) |
| 7DL | 497,931,007–503,986,607 | Turkey (223, 222, 217, 212) |
CHE_94202 CHE_96224 CHN_46_30 ISR_106 |
−0.16 −0.15 −0.16 −0.19 |
Pm19(67), Pm29(68) |
Physical positions of GWAS peaks on Chinese Spring, subset description with number of accessions in brackets and the isolates detecting them. Chr = chromosome. Values for beta are shown for the SNP of each peak with the strongest effect size. If several isolates produce the same peak, beta is listed for each. Pm genes are listed that were described on the same chromosomal arm or the same chromosome without a specified arm. Pm genes described in an overlapping genomic interval with the GWAS peak are highlighted in bold. (1) Shi et al. 1998, (2) Peusha et al. 2004, (3) Lillemo et al. 2008, (4) Tosa et al. 1987, (5) Sánchez-Martín et al. 2021, (6) Mohler et al. 2013, (7) Li et al. 2019, (8) Fu et al. 2013, (9) Komáromi et al. 2016, (10) Yu et al. 2018, (11) Xu et al. 2011, (12) Niu et al. 2008, (13) Hu et al. 2008, (14) Sun et al. 2022, (15) Wan et al. 2020, (16) Zhu et al. 2005, (17) Zhan et al. 2014, (18) Wu et al. 2019, (19) Dong et al. 2020, (20) Zhang et al. 2018, (21) Tan et al. 2019, (22) Zhang et al. 2019, (23) Wang et al. 2021, (24) Wu et al. 2022, (25) Li et al. 2020a, b, (26) Zhu et al. 2006, (27) Mu et al. 2022, (28) Maxwell et al. 2010, (29) Mohler et al. 2005, (30) Zhang et al. 2023, (31) Driscoll and Bielig 1968, (32) McIntosh et al. 2013, (33) Chao et al. 2019, (34) Xu et al. 2008, (35) Blanco et al. 2008,(36) Petersen et al. 2015, (37) Xue et al. 2012, (38) Zhang et al. 2010, (39) Sánchez-Martín et al. 2016, (40) Gao et al. 2012, (41) Zhang et al. 2016, (42) He et al. 2018, (43) Xing et al. 2018, (44) Hao et al. 2018, (45) Hewitt et al. 2021, (46) McIntosh et al. 2013, (47) Perugini et al. 2008, (48) Tan et al. 2018, (49) Zou et al. 2018, (50) Ben-David et al. 2010, (51) Ji et al. 2008, (52) Yao et al. 2007, (53) Singrün et al. 2004, (54) Worthington et al. 2014, (55) Qiu et al. 2005, (56) Chhuneja et al. 2015, (57) Ouyang et al. 2014, (58) Han et al. 2009, (59) Hsam et al. 2001, (60) Qie et al. 2019, (61) Xu et al. 2018, (62) Xie et al. 2017, (63) Wang et al. 2022, (64) Xu et al. 2020, (65) Jin et al. 2020, (66) Huang et al. 2002, (67) Lutz et al. 1995, (68) Zeller et al. 2002