Table 2.
Databases of RNA modifications
| Name | Description | URL |
|---|---|---|
| Biochemical RNA modification database | ||
| RNAMDB | A databse of basic chemical characterizations of 109 RNA modified nucleosides | https://mods.rna.albany.edu/ |
| MODOMICS | the most comprehensive RNA modification pathway source | http://modomics.genesilico.pl |
| Comprehensive reversible RNA modification databases. | ||
| m6A-Atlas | a comprehensive knowledgebase for unraveling the m6A epitranscriptome | www.xjtlu.edu.cn/biologicalsciences/atlas |
| m7GHub v2.0 | a resource deciphering the location, regulation, and pathogenesis of internal mRNA m7G epitranscriptome | www.xjtlu.edu.cn/biologicalsciences/m7ghub |
| m5C-Atlas | a database for decoding and annotating the m5C epitranscriptome | https://www.xjtlu.edu.cn/biologicalsciences/m5c-atlas |
| MeT-DB v2.0 | a database for investigation of m6A and its previous version is the first comprehensive resource for m6A in transcriptome | http://compgenomics.utsa.edu/MeTDB/ |
| RMBase v2.0 | a database deciphering the map of RNA modification from epitanscriptome sequencing data | http://rna.sysu.edu.cn/rmbase/ |
| REPIC | an atlas of m6A methylome with cell lines or tissue specificity | https://repicmod.uchicago.edu/repic |
| Specialized reversible RNA modification database | ||
| CVm6A | a visualization and exploration database for global m6A patterns across cell lines | http://gb.whu.edu.cn:8080/CVm6A |
| RMVar | a database of functional variants involved in RNA modifications | http://rmvar.renlab.org |
| RMDisease | a database unveiling the association between disease-associated variants and their epi-transcriptome disturbance | www.xjtlu.edu.cn/biologicalsciences/rmd |
| RNA Editing Database | ||
| REDIdb | a specialized database for RNA editing modifications in plant organelles | http://srv00.recas.ba.infn.it/redidb/index.html |
| RADAR | a rigorously annotated database of A-to-I RNA editing in humans, mice and flies | http://RNAedit.com |
| DARNED | a repository for RNA editing in humans, centralized on A-to-I editing | https://darned.ucc.ie/ |
| REDIportal | the largest and specialized repository for A-to-I editing occurring in a variety of human tissues | http://srv00.recas.ba.infn.it/atlas/ |