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. 2024 Jan 11;88(1):e00094-23. doi: 10.1128/mmbr.00094-23

TABLE 2.

Various mechanisms that members from four infant-associated bifidobacterial species employ for HMO, GOS, and FOS/inulin degradationa

HMOs GOS FOS/inulin References
B. infantis ABC transporters, various GHs present in 43 kb “HMO island,” intracellular Bga42A hydrolyze LNT and Bga2A for LNnT. GlcNAc-6-p deacetylase upregulated in the presence of LNT and LNnT to breakdown HMO-bound GlcNAc. GH29 1,3/1,4-α-L-fucosidase hydrolyzes the 3-fucosyl and 4-fucosyl structures of fucosylated HMOs. Predicted intracellular GH33 2,3-2,6-α-sialidases present. ABC transporter, intracellular GH2 and GH42 β-galactosidases (Bga42A, Bga42B, and Bga42C) for GOS hydrolysis.
Bg42A is encoded for 3′-GL hydrolysis.
ABC transporter, and GH13 (Blon_0128) and GH32 enzymes (Blon_2056) are expressed for FOS and inulin. Blon_0787 is encoded for FOS hydrolysis. An exoinulinase with β-fructofuranosidase and invertase for inulin. (149, 224, 244249)
B. bifidum Extracellular LnbB (GH20) liberates LNB from HMOs. Intracellular GLNBP for LNB degradation. Extracellular GH95 1,2-α-L-fucosidase for 2′-FL, GH29 1,3-1,4-α-L-fucosidase for 3-FL, and GH33 exo-α-sialidase for 6′-SL degradation. GH42 for hydrolysis of GOS
GH2 β-1,4-galactosidase and BIF3 for extracellular hydrolysis of GOS.
Highly variable. GH13 potentially involved. (7, 159, 189, 244, 247, 250255)
B. breve ABC transporters, intracellular GH95 and GH29 α-fucosidases, GH33 α-sialidase encoded for fucosylated and sialylated HMO degradation. β-Galactosidases involved in LN(n)T metabolism. GL-BG transports 6′-GL into the cells for degradation by
GH42 β-galactosidase (e.g., BbrY_0422). Endo-β-galactanase (GH53) encoded for 4′-GL degradation. ABC transporter for internalization.
MFS transporter (lacy), ABC transporter, intracellular β-fructofuranosidase encoded by GH32 family for FOS and inulin hydrolysis. Variable growth observed. (103, 105, 245, 256, 257)
B. longum GH136 lacto-N-biosidase LnbX-positive, extracellular GH95 and GH29 α-fucosidases. LnbX-negative intracellular degradation of HMOs. GH112 family, GLNBP. GH33 2,3-2,6-α-sialidase. Extracellular β-galactosidase I (BL0259), endo-β-galactanase (GH53). Intracellular GH32 β-fructofuranosidase, ABC transporters (BL1164-BL1165), and putative GHs (BL0529 and BL0544) for inulin. (129, 244, 247, 249, 258260)
a

3′-GL, 3’ galactosyllactose; LN(n)T, lacto-N-(neo)tetraose; LnbX, Lacto-N-biosidase; GH, glycoside hydrolase; GlcNac-6-p, N-acetyl-glucosamine-6-phosphate; SA-C2, sialic acid utilization cluster 2; GLNBP, GNB/LNB phosphorylase.