Table 3.
Reproducibility assay of TaqMan real-time PCR.
| Plasmid (copies) | mcr-1/2/6 | mcr-9/10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Intra- | Inter- | Intra- | Inter- | |||||||||
| Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | |
| 107 | 19.12 | 0.02 | 0.12% | 19.05 | 0.07 | 0.38% | 18.39 | 0.14 | 0.79% | 18.08 | 0.26 | 1.46% |
| 106 | 22.09 | 0.04 | 0.16% | 22.09 | 0.08 | 0.35% | 21.18 | 0.04 | 0.19% | 21.00 | 0.16 | 0.76% |
| 105 | 25.07 | 0.06 | 0.23% | 25.19 | 0.09 | 0.36% | 24.23 | 0.04 | 0.16% | 24.12 | 0.10 | 0.42% |
| 104 | 28.32 | 0.06 | 0.20% | 28.47 | 0.11 | 0.37% | 27.41 | 0.09 | 0.34% | 27.47 | 0.14 | 0.50% |
| 103 | 31.84 | 0.16 | 0.51% | 31.82 | 0.03 | 0.10% | 30.82 | 0.29 | 0.95% | 30.79 | 0.04 | 0.14% |
| Plasmid (copies) | mcr-3 | mcr-4 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Intra- | Inter- | Intra- | Inter- | |||||||||
| Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | |
| 107 | 18.34 | 0.07 | 0.36% | 18.47 | 0.15 | 0.83% | 19.37 | 0.06 | 0.31% | 19.29 | 0.09 | 0.49% |
| 106 | 21.48 | 0.06 | 0.26% | 21.70 | 0.32 | 1.46% | 21.10 | 0.20 | 0.94% | 21.05 | 0.31 | 1.46% |
| 105 | 24.58 | 0.15 | 0.59% | 24.83 | 0.32 | 1.30% | 24.49 | 0.07 | 0.29% | 24.44 | 0.10 | 0.40% |
| 104 | 27.99 | 0.20 | 0.71% | 28.12 | 0.24 | 0.85% | 27.38 | 0.18 | 0.64% | 27.44 | 0.24 | 0.86% |
| 103 | 31.20 | 0.38 | 1.22% | 31.36 | 0.38 | 1.22% | 31.06 | 0.07 | 0.23% | 30.93 | 0.26 | 0.84% |
| Plasmid (copies) | mcr-5 | mcr-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Intra- | Inter- | Intra- | Inter- | |||||||||
| Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | |
| 107 | 19.29 | 0.06 | 0.29% | 18.87 | 0.36 | 1.91% | 18.9967 | 0.18824 | 0.99% | 19.05 | 0.06 | 0.31% |
| 106 | 21.80 | 0.05 | 0.21% | 21.60 | 0.18 | 0.83% | 21.1633 | 0.09074 | 0.43% | 20.83 | 0.29 | 1.41% |
| 105 | 24.88 | 0.11 | 0.44% | 24.85 | 0.16 | 0.63% | 23.8133 | 0.31943 | 1.34% | 23.81 | 0.08 | 0.35% |
| 104 | 28.13 | 0.04 | 0.13% | 28.16 | 0.08 | 0.28% | 27.1333 | 0.07234 | 0.27% | 27.12 | 0.03 | 0.11% |
| 103 | 31.21 | 0.14 | 0.43% | 31.34 | 0.17 | 0.54% | 30.64 | 0.07 | 0.23% | 30.60 | 0.10 | 0.32% |
| Plasmid (copies) | mcr-8 | 16S rRNA | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Intra- | Inter- | Intra- | Inter- | |||||||||
| Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | Mean | SD | CV | |
| 107 | 18.33 | 0.13 | 0.71% | 18.24 | 0.12 | 0.64% | 18.9967 | 0.18824 | 0.99% | 19.05 | 0.06 | 0.31% |
| 106 | 21.43 | 0.08 | 0.35% | 21.45 | 0.15 | 0.70% | 21.1633 | 0.09074 | 0.43% | 20.83 | 0.29 | 1.41% |
| 105 | 24.81 | 0.07 | 0.28% | 24.75 | 0.20 | 0.79% | 23.8133 | 0.31943 | 1.34% | 23.81 | 0.08 | 0.35% |
| 104 | 28.22 | 0.13 | 0.46% | 28.12 | 0.11 | 0.37% | 27.1333 | 0.07234 | 0.27% | 27.12 | 0.03 | 0.11% |
| 103 | 31.24 | 0.14 | 0.46% | 31.30 | 0.24 | 0.76% | 30.64 | 0.07 | 0.23% | 30.60 | 0.10 | 0.32% |