| 4N | trochlear motor nucleus |
| ac | anterior commissure |
| AH | anterior hypothalamic nucleus |
| aot | accessory optic tract |
| APt | anterior pituitary (adenohypophysis) |
| APT | anterior pretectal nucleus |
| BIC | interstitial nucleus of the inferior collicular brachium conjunctivum |
| BSC | interstitial nucleus of the superior collicular or tectal brachium |
| Cb | cerebellum |
| cc | corpus callosum |
| chr | chorioidal roofplate |
| DCIC | dorsal cap of inferior colliculus |
| Di | diencephalon |
| dp1–dp3 | diencephalic prosomeres 1–3 |
| DPal | dorsal pallium |
| DR | dorsal raphe nucleus |
| DT | dorsal terminal nucleus of the accessory optic pathway |
| fr | fasciculus retroflexus (habenulo-interpeduncular tract) |
| hc | hippocampal commissure |
| hp1 | hypothalamo-telencephalic prosomere 1 |
| hp2 | hypothalamo-telencephalic prosomere 2 |
| HyA | hypothalamo-amygdalar corridor |
| IC | inferior colliculus |
| icc | intercollicular commissure |
| IGL | intergeniculate leaflet |
| IP | interpeduncular nucleus |
| IPN | interpeduncular nucleus |
| is | isthmic rhombomere (r0) |
| isth | isthmus |
| IVe | inferior vestibular nucleus |
| ivf | interventricular foramen |
| LG | lateral geniculate nucleus |
| ll | lateral lemniscus tract |
| lot | lateral optic tract |
| LPal | lateral pallium |
| LPc | lateral posterior nucleus, caudal part (pulvinar homolog in mouse) |
| LT | lateral terminal nucleus |
| LVe | lateral vestibular nuleus |
| M | mamillary body |
| m1–m2 | midbrain prosomeres 1–2 |
| mes | mesencephalon (midbrain) |
| MG | medual geniculate nucleus |
| MiTg | microcellular tegmental nucleus |
| mlf | medial longitudinal tract |
| mp1–mp2 | midbraon prosomeres 1–2 |
| MPal | medial pallium |
| MT | medial terminal nucleus of the accessory optic pathway |
| OB | olfactory bulb |
| och | optic chiasma |
| on | optic nerve |
| OPT | olivary pretectal nucleus |
| Ov | ovoid retinorecipient nucleus |
| p1–p3 | diencephalic prosomeres 1–3 |
| PalSe | pallial septum (now interpreted as ‘subpallial dorsal septum’) |
| PBG | parabigeminal nucleus |
| pc | posterior commissure |
| PG | pregeniculate nucleus |
| pHb | parahabenular retinorecipient nucleus |
| Pi | pineal gland |
| PLi | posterior lineal thalamic nucleus |
| POA | preoptic area |
| PP | posterior peduncular nucleus |
| PPa | peduncular paraventricular area |
| PPt | posterior pituitary (neurohypophysis) |
| PSO | parasupraoptic retinorecipient nucleus |
| PSPa | peduncular subparaventricular hypothalamic area |
| PThE | prethalamic eminence |
| r0–r11 | rhombomeres 0 (isthmus) to 11 |
| Rbd | rhabdoid nucleus |
| RM | retromamillary área |
| RP | retropeduncular nucleus |
| Rt | reticular nucleus |
| Sag | sagular nucleus |
| SC | superior colliculus |
| SCH | suprachiasmatic nucleus |
| SNC | substantia nigra compacta |
| SO | supraoptic nucleus |
| SPallSe | subpallial septum |
| SubB/Cnf | subbrachial nucleus/cuneiform nucleus or area |
| SuG | subgeniculate nucleus |
| SVe | superior vestibular nucleus |
| tc | tectal commissure |
| TG | tectal gray retinorecipient formation |
| THy | terminal hypothalamus |
| TPa | terminal paraventricular area |
| TSPa | terminal subparaventricular hypothalamic area |
| VIIm | facial motor nucleus (7th cranial nerve) |
| VIIn | facial nerve root |
| VLL | ventral nucleus of the lateral lemniscus |
| VLPO | ventrolateral preoptic nucleus |
| VPal | ventral pallium |
| xscp | decussation of superior cerebellar peduncle |
| Zi | zona incerta |