| AGEs | advanced glycation end products |
| BSA | bovine serum albumin |
| BSA124–130 | BSA peptide including residues 124–130 with Lys127 glycated into CEL |
| CAPRI | critical assessment of predicted interactions |
| CEL | carboxyethyl lysine |
| CML | carboxymethyl lysine |
| CSA | chicken serum albumin |
| DM | diabetes mellitus |
| ESA | equine serum albumin |
| FA | fatty acid |
| FA1–7 | fatty acid binding sites 1–7 in serum albumin |
| gBSA | glycated bovine serum albumin |
| gHSA | glycated human serum albumin |
| gHSA–V | complex of gHSA with the V-domain of RAGE |
| gSA | glycated serum albumin |
| GLUC | β-D-glucopyranose |
| HMGB1 | high-mobility group protein B1 |
| HSA | human serum albumin |
| IS1–3 | interaction surface 1–3 (experimentally obtained areas on the surface of RAGE interacting with AGE-peptides and gBSA) |
| IUPAC | international union of pure and applied chemistry |
| LINCS | linear constraint solver for molecular simulations |
| LSA | leporine serum albumin |
| MD | molecular dynamics |
| NMR | nuclear magnetic resonance |
| NPT | constant number of particles N, pressure P and temperature T |
| NVT | constant number of particles N, volume V and temperature T |
| OLA | oleic acid |
| PDB | Protein Data Bank |
| RAGE | receptor for advanced glycation end products |
| Rg | radius of gyration; |
| RMSD | root mean square deviation |
| RMSF | root mean square fluctuation |
| SASA | solvent accessible surface area |
| SF | scoring function |
| TIP3P | transferable intermolecular potential with 3 points |
| VMD | visual molecular dynamics |