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. 2024 Mar 11;25(6):3204. doi: 10.3390/ijms25063204
AGEs advanced glycation end products
BSA bovine serum albumin
BSA124–130 BSA peptide including residues 124–130 with Lys127 glycated into CEL
CAPRI critical assessment of predicted interactions
CEL carboxyethyl lysine
CML carboxymethyl lysine
CSA chicken serum albumin
DM diabetes mellitus
ESA equine serum albumin
FA fatty acid
FA1–7 fatty acid binding sites 1–7 in serum albumin
gBSA glycated bovine serum albumin
gHSA glycated human serum albumin
gHSA–V complex of gHSA with the V-domain of RAGE
gSA glycated serum albumin
GLUC β-D-glucopyranose
HMGB1 high-mobility group protein B1
HSA human serum albumin
IS1–3 interaction surface 1–3 (experimentally obtained areas on the surface of RAGE interacting with AGE-peptides and gBSA)
IUPAC international union of pure and applied chemistry
LINCS linear constraint solver for molecular simulations
LSA leporine serum albumin
MD molecular dynamics
NMR nuclear magnetic resonance
NPT constant number of particles N, pressure P and temperature T
NVT constant number of particles N, volume V and temperature T
OLA oleic acid
PDB Protein Data Bank
RAGE receptor for advanced glycation end products
Rg radius of gyration;
RMSD root mean square deviation
RMSF root mean square fluctuation
SASA solvent accessible surface area
SF scoring function
TIP3P transferable intermolecular potential with 3 points
VMD visual molecular dynamics