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. 2024 Mar 7;27(4):109448. doi: 10.1016/j.isci.2024.109448
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) Cell Signaling Technology Cat#9101S (RRID: AB_331646)
Mouse monoclonal anti-CCNB1 Santa Cruz SC-245 (RRID: AB_627338)
Mouse monoclonal anti-beta actin Santa Cruz SC-47778 (RRID: AB_626632)
Rabbit monoclonal anti- Cleaved Caspase-3 Cell Signaling Technology Cat#9664S (RRID: AB_2070042)

Chemicals, peptides, and recombinant proteins

CCR6 inhibitor MedChem Express Cat# HY-112701
PD0325901 Peprotech Cat# 3911091

Critical commercial assays

Seahorse XF Glycolytic Rate Assay Kit Agilent Cat# 103344–100
Seahorse XF Mitochondrial Respiration Assay Kit Agilent Cat# 103260–100
MitoSOX™ Mitochondrial Superoxide Indicators Invitrogen Cat# M36008

Deposited data

Raw and analyzed RNA-seq data This paper GEO: GSE244730

Experimental models: Cell lines

PC-9 cells Laboratory stocks RRID: CVCL_B260
HCC827 cells Laboratory stocks RRID: CVCL_2063

Software and algorithms

ImageJ National Institutes of Health https://imagej.nih.gov/ij/
JuLI stage NanoEntek http://www.julistage.com
Seahorse XF Pro Analyzer Agilent https://www.agilent.com
R version 4.2.3 R Development Core Team https://www.r-project.org/
FASTQC version 0.11.9 Babraham Bioinformatics Group https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
TrimGalore version 0.6.6 Babraham Bioinformatics Group https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
STAR version 2.7.9a Alexander Dobin et al.69 https://github.com/alexdobin/STAR
RSEM version 1.3.3 Bo Li et al.70 https://github.com/deweylab/RSEM
GraphPad Prism 9 version.4.2.3 GraphPad Software, Inc. https://www.graphpad.com/features
FlowJo BD Biosciences https://www.bdbiosciences.com/en-us/products/software/flowjo-v10-software

Other

DepMap portal Open-source https://depmap.org/portal/
GDSC Open-source https://www.cancerrxgene.org
TCGA Open-source https://gdc.cancer.gov/about-data/publications/pancanatlas
cBioPortal Open-source https://www.cbioportal.org
MsigDB Open-source https://www.gsea-msigdb.org/gsea/msigdb
DrugBank Open-source https://go.drugbank.com