| Antibodies |
|
| Rabbit polyclonal anti-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) |
Cell Signaling Technology |
Cat#9101S (RRID: AB_331646) |
| Mouse monoclonal anti-CCNB1 |
Santa Cruz |
SC-245 (RRID: AB_627338) |
| Mouse monoclonal anti-beta actin |
Santa Cruz |
SC-47778 (RRID: AB_626632) |
| Rabbit monoclonal anti- Cleaved Caspase-3 |
Cell Signaling Technology |
Cat#9664S (RRID: AB_2070042) |
|
| Chemicals, peptides, and recombinant proteins |
|
| CCR6 inhibitor |
MedChem Express |
Cat# HY-112701 |
| PD0325901 |
Peprotech |
Cat# 3911091 |
|
| Critical commercial assays |
|
| Seahorse XF Glycolytic Rate Assay Kit |
Agilent |
Cat# 103344–100 |
| Seahorse XF Mitochondrial Respiration Assay Kit |
Agilent |
Cat# 103260–100 |
| MitoSOX™ Mitochondrial Superoxide Indicators |
Invitrogen |
Cat# M36008
|
|
| Deposited data |
|
| Raw and analyzed RNA-seq data |
This paper |
GEO: GSE244730
|
|
| Experimental models: Cell lines |
|
| PC-9 cells |
Laboratory stocks |
RRID: CVCL_B260 |
| HCC827 cells |
Laboratory stocks |
RRID: CVCL_2063 |
|
| Software and algorithms |
|
| ImageJ |
National Institutes of Health |
https://imagej.nih.gov/ij/ |
| JuLI stage |
NanoEntek |
http://www.julistage.com |
| Seahorse XF Pro Analyzer |
Agilent |
https://www.agilent.com |
| R version 4.2.3 |
R Development Core Team |
https://www.r-project.org/ |
| FASTQC version 0.11.9 |
Babraham Bioinformatics Group |
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
| TrimGalore version 0.6.6 |
Babraham Bioinformatics Group |
https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ |
| STAR version 2.7.9a |
Alexander Dobin et al.69
|
https://github.com/alexdobin/STAR |
| RSEM version 1.3.3 |
Bo Li et al.70
|
https://github.com/deweylab/RSEM |
| GraphPad Prism 9 version.4.2.3 |
GraphPad Software, Inc. |
https://www.graphpad.com/features |
| FlowJo |
BD Biosciences |
https://www.bdbiosciences.com/en-us/products/software/flowjo-v10-software |
|
| Other |
|
| DepMap portal |
Open-source |
https://depmap.org/portal/ |
| GDSC |
Open-source |
https://www.cancerrxgene.org |
| TCGA |
Open-source |
https://gdc.cancer.gov/about-data/publications/pancanatlas |
| cBioPortal |
Open-source |
https://www.cbioportal.org |
| MsigDB |
Open-source |
https://www.gsea-msigdb.org/gsea/msigdb |
| DrugBank |
Open-source |
https://go.drugbank.com |